Chad Niederhuth
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The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
DJ Bertioli, SB Cannon, L Froenicke, G Huang, AD Farmer, EKS Cannon, ...
Nature genetics 48 (4), 438-446, 2016
Widespread natural variation of DNA methylation within angiosperms
CE Niederhuth, AJ Bewick, L Ji, MS Alabady, K Do Kim, Q Li, NA Rohr, ...
Genome biology 17 (1), 1-19, 2016
On the origin and evolutionary consequences of gene body DNA methylation
AJ Bewick, L Ji, CE Niederhuth, EM Willing, BT Hofmeister, X Shi, L Wang, ...
Proceedings of the National Academy of Sciences 113 (32), 9111-9116, 2016
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ...
Gigascience 7 (2), gix124, 2018
Putting DNA methylation in context: from genomes to gene expression in plants
CE Niederhuth, RJ Schmitz
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 149-156, 2017
The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants
AJ Bewick, CE Niederhuth, L Ji, NA Rohr, PT Griffin, J Leebens-Mack, ...
Genome biology 18 (1), 1-13, 2017
Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq
CE Niederhuth, OR Patharkar, JC Walker
BMC genomics 14 (1), 1-12, 2013
Covering your bases: inheritance of DNA methylation in plant genomes
CE Niederhuth, RJ Schmitz
Molecular plant 7 (3), 472-480, 2014
A comparative analysis of 5-azacytidine-and zebularine-induced DNA demethylation
PT Griffin, CE Niederhuth, RJ Schmitz
G3: Genes, Genomes, Genetics 6 (9), 2773-2780, 2016
Letting Go is Never Easy: Abscission and Receptor‐L ike Protein Kinases
CE Niederhuth, SK Cho, K Seitz, JC Walker
Journal of Integrative Plant Biology 55 (12), 1251-1263, 2013
The Dnmt3L ADD domain controls cytosine methylation establishment during spermatogenesis
G Vlachogiannis, CE Niederhuth, S Tuna, A Stathopoulou, K Viiri, ...
Cell reports 10 (6), 944-956, 2015
pENCODE: a plant encyclopedia of DNA elements
AK Lane, CE Niederhuth, L Ji, RJ Schmitz
Annual review of genetics 48, 49-70, 2014
DVL genes play a role in the coordination of socket cell recruitment and differentiation
ER Valdivia, D Chevalier, J Sampedro, I Taylor, CE Niederhuth, ...
Journal of experimental botany 63 (3), 1405-1412, 2012
Establishment, maintenance, and biological roles of non-CG methylation in plants
SK Kenchanmane Raju, EJ Ritter, CE Niederhuth
Essays in biochemistry 63 (6), 743-755, 2019
From gigabyte to kilobyte: a bioinformatics protocol for mining large RNA-Seq transcriptomics data
J Li, J Hou, L Sun, JM Wilkins, Y Lu, CE Niederhuth, BR Merideth, ...
PloS one 10 (4), e0125000, 2015
Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus
KA Bird, CE Niederhuth, S Ou, M Gehan, JC Pires, Z Xiong, R VanBuren, ...
New Phytologist 230 (1), 354-371, 2021
Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement
G Agarwal, H Kudapa, A Ramalingam, D Choudhary, P Sinha, V Garg, ...
Functional & Integrative Genomics, 1-23, 2020
DNA methylation signatures of duplicate gene evolution in angiosperms
SKK Raju, SM Ledford, CE Niederhuth
bioRxiv, 2020
Epigenetic diversity and application to breeding
SKK Raju, CE Niederhuth
Advances in Botanical Research 88, 49-86, 2018
Prenatal testosterone triggers long-term behavioral changes in male zebra finches: unravelling the neurogenomic mechanisms
AB Bentz, CE Niederhuth, LL Carruth, KJ Navara
BMC genomics 22 (1), 1-11, 2021
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