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Carolina Carpenter
Carolina Carpenter
Verified email at ucsd.edu
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Cited by
Cited by
Year
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
7922020
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1932020
Gastrointestinal surgery for inflammatory bowel disease persistently lowers microbiome and metabolome diversity
X Fang, Y Vázquez-Baeza, E Elijah, F Vargas, G Ackermann, ...
Inflammatory bowel diseases 27 (5), 603-616, 2021
302021
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities
JP Shaffer, CS Carpenter, C Martino, RA Salido, JJ Minich, MK Bryant, ...
Biotechniques 73 (1), 34-46, 2022
282022
A 3000 year record of Caribbean reef urchin communities reveals causes and consequences of long‐term decline in Diadema antillarum
KL Cramer, A O’Dea, C Carpenter, RD Norris
Ecography 41 (1), 164-173, 2018
252018
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ...
Microbiome 9 (1), 1-13, 2021
21*2021
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ...
BioTechniques, 2021
212021
Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs
JM Gauglitz, JT Morton, A Tripathi, S Hansen, M Gaffney, C Carpenter, ...
Msystems 5 (2), 10.1128/msystems. 00635-19, 2020
142020
Reply to: caution regarding the specificities of pan-cancer microbial structure
GD Sepich-Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, ...
bioRxiv, 2023.02. 10.528049, 2023
82023
Swapping metagenomics preprocessing pipeline components offers speed and sensitivity increases
G Armstrong, C Martino, J Morris, B Khaleghi, J Kang, J DeReus, Q Zhu, ...
Msystems 7 (2), e01378-21, 2022
52022
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome
BC Taylor, M Sheikh Andalibi, S Wandro, KC Weldon, GD Sepich-Poore, ...
Microorganisms 11 (4), 1022, 2023
12023
Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution
HE Epstein, T Brown, AO Akinrinade, R McMinds, FJ Pollock, D Sonett, ...
bioRxiv, 2023.04. 26.538152, 2023
12023
Class Ib MHC–Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine
S Dasgupta, I Maricic, J Tang, S Wandro, K Weldon, CS Carpenter, ...
ImmunoHorizons 5 (12), 953-971, 2021
12021
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (vol 70, pg 149, 2021)
J Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ...
BIOTECHNIQUES 75 (6), 1-1, 2024
2024
Robustness of cancer microbiome signals over a broad range of methodological variation
GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ...
Oncogene, 1-22, 2024
2024
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases
D Roush, D McDonald, A Gonazlez, JP Shaffer, C Carpenter, M Estaki, ...
2022
Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs (preprint)
JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ...
2020
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (preprint)
JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ...
2020
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Articles 1–18