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Jerome Bouquet
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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
AL Greninger, SN Naccache, S Federman, G Yu, P Mbala, V Bres, ...
Genome medicine 7 (1), 1-13, 2015
4852015
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
SN Naccache, S Federman, N Veeraraghavan, M Zaharia, D Lee, ...
Genome research 24 (7), 1180-1192, 2014
4462014
Close similarity between sequences of hepatitis e virus recovered from humans and swine, France, 2008− 2009
J Bouquet, S Tessé, A Lunazzi, M Eloit, N Rose, E Nicand, N Pavio
Emerging infectious diseases 17 (11), 2018, 2011
1202011
The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease
J Legoff, M Resche-Rigon, J Bouquet, M Robin, SN Naccache, ...
Nature medicine 23 (9), 1080-1085, 2017
1042017
Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing
AL Greninger, K Messacar, T Dunnebacke, SN Naccache, S Federman, ...
Genome medicine 7 (1), 1-14, 2015
1012015
Genomic epidemiology reconstructs the introduction and spread of Zika virus in Central America and Mexico
J Thézé, T Li, L Du Plessis, J Bouquet, MUG Kraemer, S Somasekar, G Yu, ...
Cell host & microbe 23 (6), 855-864. e7, 2018
952018
Longitudinal transcriptome analysis reveals a sustained differential gene expression signature in patients treated for acute Lyme disease
J Bouquet, MJ Soloski, A Swei, C Cheadle, S Federman, JN Billaud, ...
MBio 7 (1), e00100-16, 2016
872016
Biological activities of nitidine, a potential anti-malarial lead compound
J Bouquet, M Rivaud, S Chevalley, E Deharo, V Jullian, A Valentin
Malaria Journal 11 (1), 1-8, 2012
732012
The SARS-CoV-2 monoclonal antibody combination, AZD7442, is protective in nonhuman primates and has an extended half-life in humans
YM Loo, PM McTamney, RH Arends, ME Abram, AA Aksyuk, S Diallo, ...
Science translational medicine 14 (635), eabl8124, 2022
642022
New models of hepatitis E virus replication in human and porcine hepatocyte cell lines
S Rogee, N Talbot, T Caperna, J Bouquet, E Barnaud, N Pavio
Journal of General Virology 94 (3), 549-558, 2013
642013
Experimental Zika virus inoculation in a New World monkey model reproduces key features of the human infection
CY Chiu, SS Martín, J Bouquet, T Li, S Yagi, M Tamhankar, VL Hodara, ...
Scientific reports 7 (1), 1-11, 2017
512017
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med 7: 99
AL Greninger, SN Naccache, S Federman, G Yu, P Mbala, V Bres, ...
492015
Genetic characterization and codon usage bias of full-length Hepatitis E virus sequences shed new lights on genotypic distribution, host restriction and genome evolution
J Bouquet, P Cherel, N Pavio
Infection, Genetics and Evolution 12 (8), 1842-1853, 2012
412012
Identical consensus sequence and conserved genomic polymorphism of hepatitis E virus during controlled interspecies transmission
J Bouquet, J Cheval, S Rogée, N Pavio, M Eloit
Journal of virology 86 (11), 6238-6245, 2012
402012
Metagenomic-based surveillance of Pacific Coast tick Dermacentor occidentalis identifies two novel bunyaviruses and an emerging human ricksettsial pathogen
J Bouquet, M Melgar, A Swei, E Delwart, RS Lane, CY Chiu
Scientific reports 7 (1), 1-10, 2017
392017
Microbial burden and viral exacerbations in a longitudinal multicenter COPD cohort
J Bouquet, DE Tabor, JS Silver, V Nair, A Tovchigrechko, MP Griffin, ...
Respiratory research 21 (1), 1-13, 2020
382020
AZD7442 demonstrates prophylactic and therapeutic efficacy in non-human primates and extended half-life in humans
YM Loo, PM McTamney, RH Arends, RA Gasser, ME Abram, A Aksyuk, ...
medRxiv, 2021
322021
Quantitative proteomics identifies host factors modulated during acute hepatitis E virus infection in the swine model
S Rogée, M Le Gall, P Chafey, J Bouquet, N Cordonnier, C Frederici, ...
Journal of virology 89 (1), 129-143, 2015
252015
Differentiation enhances Zika virus infection of neuronal brain cells
SS Martín, T Li, J Bouquet, J Streithorst, G Yu, A Paranjpe, CY Chiu
Scientific reports 8 (1), 1-10, 2018
232018
Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing
J Bouquet, T Li, JL Gardy, X Kang, S Stevens, J Stevens, M VanNess, ...
PloS one 14 (3), e0212193, 2019
212019
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