Catharina Olsen
Catharina Olsen
UZ Brussel
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Cited by
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
A Colaprico, TC Silva, C Olsen, L Garofano, C Cava, D Garolini, ...
Nucleic acids research, gkv1507, 2015
Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ...
Cell, 2018
PharmacoGx: an R package for analysis of large pharmacogenomic datasets
P Smirnov, Z Safikhani, N El-Hachem, D Wang, A She, C Olsen, ...
Bioinformatics, btv723, 2015
mRMRe: an R package for parallelized mRMR ensemble feature selection
N De Jay, S Papillon-Cavanagh, C Olsen, N El-Hachem, G Bontempi, ...
Bioinformatics 29 (18), 2365-2368, 2013
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
Nature Communications, 2019
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx
M Mounir, M Lucchetta, TC Silva, C Olsen, G Bontempi, X Chen, ...
PLoS computational biology 15 (3), e1006701, 2019
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
TC Silva, A Colaprico, C Olsen, F D'Angelo, G Bontempi, M Ceccarelli, ...
F1000Research 5, 2016
On the impact of entropy estimation on transcriptional regulatory network inference based on mutual information
O Catharina, M Patrick E, B Gianluca
EURASIP Journal on Bioinformatics and Systems Biology 2009, 2009
Portraying breast cancers with long noncoding RNAs
O Van Grembergen, M Bizet, J Eric, E Calonne, P Putmans, S Brohée, ...
Science Advances 2 (9), e1600220, 2016
Comparison and validation of genomic predictors for anticancer drug sensitivity
S Papillon-Cavanagh, N De Jay, N Hachem, C Olsen, G Bontempi, ...
Journal of the American Medical Informatics Association 20 (4), 597-602, 2013
Applied Statistics for Network Biology: Methods in Systems Biology
PE Meyer, C Olsen, G Bontempi
Inference and validation of predictive gene networks from biomedical literature and gene expression data
C Olsen, K Fleming, N Prendergast, R Rubio, F Emmert-Streib, ...
Genomics 103 (5), 329-336, 2014
SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data
C Cava, A Colaprico, G Bertoli, A Graudenzi, TC Silva, C Olsen, ...
International Journal of Molecular Sciences 18 (2), 274, 2017
NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference
PEM P Bellot, C Olsen, P Salembier, A Oliveras-Vergés
BMC Bioinformatics, 2015
Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks
B Haibe-Kains, C Olsen, A Djebbari, G Bontempi, M Correll, C Bouton, ...
Nucleic acids research 40 (D1), D866-D875, 2012
Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis
C Cava, G Bertoli, A Colaprico, C Olsen, G Bontempi, I Castiglioni
BMC genomics 19 (1), 25, 2018
Interpreting pathways to discover cancer driver genes with Moonlight
A Colaprico, C Olsen, MH Bailey, GJ Odom, T Terkelsen, TC Silva, ...
Nature Communications 11 (1), 1-17, 2020
TCGAbiolinksGUI: A graphical user interface to analyze GDC cancer molecular and clinical data
TC Silva, A Colaprico, C Olsen, G Bontempi, M Ceccarelli, BP Berman, ...
bioRxiv, 147496, 2017
Inferring causal relationships using informationtheoretic measures
C Olsen, PE Meyer, G Bontempi
Proceedings of the 5th Benelux Bioinformatics Conference (BBC09), 2009
Relevance of different prior knowledge sources for inferring gene interaction networks
C Olsen, G Bontempi, F Emmert-Streib, J Quackenbush, B Haibe-Kains
Frontiers in genetics 5, 2014
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