Bram Vrancken
Bram Vrancken
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SpreaD3: interactive visualization of spatiotemporal history and trait evolutionary processes
F Bielejec, G Baele, B Vrancken, MA Suchard, A Rambaut, P Lemey
Molecular biology and evolution 33 (8), 2167-2169, 2016
The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates
B Vrancken, A Rambaut, MA Suchard, A Drummond, G Baele, ...
PLoS Comput Biol 10 (4), e1003505, 2014
Distinct effects of T-705 (favipiravir) and ribavirin on influenza virus replication and viral RNA synthesis
E Vanderlinden, B Vrancken, J Van Houdt, VK Rajwanshi, S Gillemot, ...
Antimicrobial agents and chemotherapy 60 (11), 6679-6691, 2016
Covering all bases in HIV research: unveiling a hidden world of viral evolution.
B Vrancken, S Lequime, K Theys, P Lemey
AIDS reviews 12 (2), 89, 2010
HIV rebound is predominantly fueled by genetically identical viral expansions from diverse reservoirs
MA De Scheerder, B Vrancken, S Dellicour, T Schlub, E Lee, W Shao, ...
Cell host & microbe 26 (3), 347-358. e7, 2019
Host ecology determines the dispersal patterns of a plant virus
NS Trovão, G Baele, B Vrancken, F Bielejec, MA Suchard, D Fargette, ...
Virus evolution 1 (1), 2015
Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution
B Vrancken, P Lemey, A Rambaut, T Bedford, B Longdon, HF Günthard, ...
Methods in ecology and evolution 6 (1), 67-82, 2015
Contribution of epidemiological predictors in unraveling the phylogeographic history of HIV-1 subtype C in Brazil
T Gräf, B Vrancken, DM Junqueira, RM de Medeiros, MA Suchard, ...
Journal of virology 89 (24), 12341-12348, 2015
Recent advances in computational phylodynamics
G Baele, S Dellicour, MA Suchard, P Lemey, B Vrancken
Current opinion in virology 31, 24-32, 2018
The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia
AA Al-Qahtani, G Baele, N Khalaf, MA Suchard, MR Al-Anazi, AA Abdo, ...
Scientific reports 7, 44947, 2017
Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution
B Vrancken, G Baele, AM Vandamme, K Van Laethem, MA Suchard, ...
AIDS (London, England) 29 (12), 1549, 2015
Implications of hepatitis C virus subtype 1a migration patterns for virus genetic sequencing policies in Italy
L Cuypers, B Vrancken, L Fabeni, N Marascio, V Cento, VC Di Maio, ...
BMC evolutionary biology 17 (1), 1-10, 2017
Accurate quantification of within-and between-host HBV evolutionary rates requires explicit transmission chain modelling
B Vrancken, MA Suchard, P Lemey
Virus evolution 3 (2), vex028, 2017
HIV persists throughout deep tissues with repopulation from multiple anatomical sources
A Chaillon, S Gianella, S Dellicour, SA Rawlings, TE Schlub, ...
The Journal of Clinical Investigation 130 (4), 2020
Proposal for a new subtype of the zoonotic genotype 3 Hepatitis E virus: HEV-3l
L De Sabato, P Lemey, B Vrancken, L Bonfanti, L Ceglie, G Vaccari, ...
Virus research 248, 1-4, 2018
A near-full length genotypic assay for HCV1b
L Cuypers, J Snoeck, B Vrancken, L Kerremans, G Vuagniaux, ...
Journal of virological methods 209, 126-135, 2014
On the importance of negative controls in viral landscape phylogeography
S Dellicour, B Vrancken, NS Trovão, D Fargette, P Lemey
Virus evolution 4 (2), vey023, 2018
Detection of natural resistance-associated substitutions by ion semiconductor technology in HCV1b positive, direct-acting antiviral agents-naïve patients
N Marascio, G Pavia, A Strazzulla, T Dierckx, L Cuypers, B Vrancken, ...
International journal of molecular sciences 17 (9), 1416, 2016
Quantifying next generation sequencing sample pre-processing bias in HIV-1 complete genome sequencing
B Vrancken, NS Trovão, G Baele, E Van Wijngaerden, AM Vandamme, ...
Viruses 8 (1), 12, 2016
Transmission dynamics of re-emerging rabies in domestic dogs of rural China
H Tian, Y Feng, B Vrancken, B Cazelles, H Tan, MS Gill, Q Yang, Y Li, ...
PLoS pathogens 14 (12), e1007392, 2018
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