St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ... Cancer discovery 11 (5), 1082-1099, 2021 | 124 | 2021 |
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, A Thrasher, ... Genome biology 21, 1-18, 2020 | 83 | 2020 |
Structure and evolution of double minutes in diagnosis and relapse brain tumors K Xu, L Ding, TC Chang, Y Shao, J Chiang, H Mulder, S Wang, TI Shaw, ... Acta neuropathologica 137, 123-137, 2019 | 71 | 2019 |
Pediatric Cancer Variant Pathogenicity Information Exchange (PeCanPIE): a cloud-based platform for curating and classifying germline variants MN Edmonson, AN Patel, DJ Hedges, Z Wang, E Rampersaud, ... Genome research 29 (9), 1555-1565, 2019 | 36 | 2019 |
RNAseqCNV: analysis of large-scale copy number variations from RNA-seq data J Bařinka, Z Hu, L Wang, DA Wheeler, D Rahbarinia, C McLeod, Z Gu, ... Leukemia 36 (6), 1492-1498, 2022 | 18 | 2022 |
St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem. Cancer Discov. 2021; 11: 1082–1099. doi: 10.1158/2159-8290 C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ... CD-20-1230.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0 | 10 | |
A framework for distributed deep learning layer design in python C McLeod arXiv preprint arXiv:1510.07303, 2015 | 9 | 2015 |
Jude cloud: a pediatric cancer genomic Data-Sharing ecosystem. Cancer Discov 2021; 11: 1082–99. doi: 10.1158/2159-8290 C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ... CD-20-1230 http://www. ncbi. nlm. nih. gov/pubmed/33408242, 0 | 7 | |
NetBID2 provides comprehensive hidden driver analysis X Dong, L Ding, A Thrasher, X Wang, J Liu, Q Pan, J Rash, Y Dhungana, ... Nature Communications 14 (1), 2581, 2023 | 6 | 2023 |
Data access and interactive visualization of whole genome sequence of sickle cell patients within the St. Jude Cloud LE Palmer, X Zhou, C McLeod, E Rampersaud, JH Estepp, X Tang, ... Blood 132, 723, 2018 | 3 | 2018 |
St. Jude Pediatric Brain Tumor Portal: Cloud-based resource for patient-derived orthotopic xenograft (PDOX) models of pediatric high-grade glioma, ependymoma, and CNS embryonal … PS Dunphy*, K Xu*, DT Gentry*, C He, K Mercer, X Zhu, K Smith, ... Cancer Research 80 (16_Supplement), 6144-6144, 2020 | 1 | 2020 |
Access, visualize and analyze 5,000 whole-genomes from pediatric cancer patients on St. Jude Cloud S Newman, X Zhou, C McLeod, M Rusch, G Wu, E Sioson, S Wang, ... Cancer Research 78 (13_Supplement), 922-922, 2018 | 1 | 2018 |
St. Jude Survivorship Portal: sharing and analyzing large clinical and genomic datasets from pediatric cancer survivors GY Matt, E Sioson, K Shelton, J Wang, C Lu, A Zaldivar Peraza, ... Cancer Discovery, 2024 | | 2024 |
Ontology guided navigation of somatic variants, mutational signatures, gene expression and histology images for pediatric cancer AM Gout, S Sandor, D Rahbarinia, J Sunny, J Madson, L Vacaroiu, ... Cancer Research 83 (7_Supplement), 3163-3163, 2023 | | 2023 |
NetBID2 provides comprehensive hidden driver analysis J Yu, X Dong, L Ding, A Thrasher, X Wang, J Liu, Q Pan, J Rash, ... | | 2022 |
VisComm: A cloud-based platform for accessing and creating scientific visualization for the pediatric cancer research community DB Finkelstein, J Madson, L Vacaroiu, AM Gout, L Hirja, S Sandor, ... Cancer Research 82 (12_Supplement), 1901-1901, 2022 | | 2022 |
Empowering point-and-click genomic analysis with large pediatric genomic reference data on St. Jude Cloud A Thrasher, M Macias, AM Gout, D Rahbarinia, X Zhou, SW Brady, ... Cancer Research 81 (13_Supplement), 2289-2289, 2021 | | 2021 |
CICERO: An accurate method for detecting complex and diverse driver fusions using cancer transcriptome sequencing (RNA-seq) data L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, Y Liu, B Tang, ... Cancer Research 80 (16_Supplement), 5478-5478, 2020 | | 2020 |
An innovative integrated cloud-based data portal for orthotopic patient-derived xenografts (O-PDX) available through the Childhood Solid Tumor Network (CSTN) A Karlstrom*, TC Chang*, D Gentry*, X Zhou, E Stewart, B Gordon, ... Cancer Research 80 (16_Supplement), 6149-6149, 2020 | | 2020 |
Visualize 10,000 whole-genomes from pediatric cancer patients on St. Jude Cloud X Zhou, C Mcleod, S Newman, Z Wang, M Rusch, K Birch, M Macias, ... Cancer Research 79 (13_Supplement), 3671-3671, 2019 | | 2019 |