Daniel Newburger
Daniel Newburger
Graduate Student in Biomedical Informatics, Stanford University
Verified email at stanford.edu
Title
Cited by
Cited by
Year
Diversity and complexity in DNA recognition by transcription factors
G Badis, MF Berger, AA Philippakis, S Talukder, AR Gehrke, SA Jaeger, ...
Science 324 (5935), 1720, 2009
9752009
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ...
Cell 133 (7), 1266-1276, 2008
6152008
High-resolution DNA-binding specificity analysis of yeast transcription factors
C Zhu, KJRP Byers, RP McCord, Z Shi, MF Berger, DE Newburger, ...
Genome research 19 (4), 556-566, 2009
4462009
UniPROBE: an online database of protein binding microarray data on protein–DNA interactions
DE Newburger, ML Bulyk
Nucleic acids research 37 (suppl_1), D77-D82, 2009
4162009
A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors
CA Grove, F De Masi, MI Barrasa, DE Newburger, MJ Alkema, ML Bulyk, ...
Cell 138 (2), 314-327, 2009
2542009
Heterogeneity of nemaline myopathy cases with skeletal muscle α‐actin gene mutations
PB Agrawal, CD Strickland, C Midgett, A Morales, DE Newburger, ...
Annals of neurology 56 (1), 86-96, 2004
1312004
Genome evolution during progression to breast cancer
DE Newburger, D Kashef-Haghighi, Z Weng, R Salari, RT Sweeney, ...
Genome research 23 (7), 1097-1108, 2013
982013
Read clouds uncover variation in complex regions of the human genome
A Bishara, Y Liu, Z Weng, D Kashef-Haghighi, DE Newburger, R West, ...
Genome research 25 (10), 1570-1580, 2015
592015
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
JS Rozowsky, D Newburger, F Sayward, J Wu, G Jordan, JO Korbel, ...
Genome research 17 (6), 732-745, 2007
312007
Inference of tumor phylogenies with improved somatic mutation discovery
R Salari, SS Saleh, D Kashef-Haghighi, D Khavari, DE Newburger, ...
Journal of Computational Biology 20 (11), 933-944, 2013
232013
A flexible approach for highly multiplexed candidate gene targeted resequencing
G Natsoulis, JM Bell, H Xu, JD Buenrostro, H Ordonez, S Grimes, ...
PloS one 6 (6), e21088, 2011
232011
Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia
Z Weng, N Spies, SX Zhu, DE Newburger, D Kashef-Haghighi, ...
Genome medicine 7 (1), 1-10, 2015
162015
A cross-sample statistical model for SNP detection in short-read sequencing data
O Muralidharan, G Natsoulis, J Bell, D Newburger, H Xu, I Kela, H Ji, ...
Nucleic acids research 40 (1), e5-e5, 2012
122012
The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome
DE Newburger, G Natsoulis, S Grimes, JM Bell, RW Davis, S Batzoglou, ...
Nucleic acids research 40 (D1), D1137-D1143, 2012
82012
Read Clouds Uncover Variation in Complex Regions of the Human Genome
DE Newburger, R West, A Sidow, S Batzoglou
Research in Computational Molecular Biology: 19th Annual International …, 2015
2015
Analysis of Genomic Variants for Investigating the Genetic Etiology of Disease
DE Newburger
Stanford University, 2015
2015
Abstract PD05-09: Whole-genome progression of breast cancer from early neoplasia to invasive carcinoma
RB West, D Kashef-Haghighi, D Newburger, Z Weng, A Brunner, R Salari, ...
Cancer Research 72 (24 Supplement), PD05-09-PD05-09, 2012
2012
Efficient Alignment Free Sequence Comparison with Bounded Mismatches... 1 Srinivas Aluru, Alberto Apostolico, and Sharma V. Thankachan DockStar: A Novel ILP Based Integrative …
N Amir, D Cohen, HJ Wolfson, I Ben-Bassat, B Chor, E Berger, ...
Supplementary Methods for “High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors”
C Zhu, K Byers, R McCord, Z Shi, M Berger, D Newburger, K Saulrieta, ...
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