| Determination and inference of eukaryotic transcription factor sequence specificity MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ... Cell 158 (6), 1431-1443, 2014 | 931 | 2014 |
| Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes L Franke, H Van Bakel, L Fokkens, ED De Jong, M Egmont-Petersen, ... The American Journal of Human Genetics 78 (6), 1011-1025, 2006 | 568 | 2006 |
| Most “dark matter” transcripts are associated with known genes H Van Bakel, C Nislow, BJ Blencowe, TR Hughes PLoS Biol 8 (5), e1000371, 2010 | 477 | 2010 |
| A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ... Molecular cell 32 (6), 878-887, 2008 | 448 | 2008 |
| The draft genome and transcriptome of Cannabis sativa H Van Bakel, JM Stout, AG Cote, CM Tallon, AG Sharpe, TR Hughes, ... Genome biology 12 (10), 1-18, 2011 | 405 | 2011 |
| Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ... Science 362 (6420), 2018 | 326 | 2018 |
| Characterization of the human ESC transcriptome by hybrid sequencing KF Au, V Sebastiano, PT Afshar, JD Durruthy, L Lee, BA Williams, ... Proceedings of the National Academy of Sciences 110 (50), E4821-E4830, 2013 | 242 | 2013 |
| Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets J van de Peppel, N Kettelarij, H van Bakel, TTJP Kockelkorn, ... Molecular cell 19 (4), 511-522, 2005 | 230 | 2005 |
| Monitoring global messenger RNA changes in externally controlled microarray experiments J van de Peppel, P Kemmeren, H van Bakel, M Radonjic, D van Leenen, ... EMBO reports 4 (4), 387-393, 2003 | 213 | 2003 |
| Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ... Cell 157 (3), 740-752, 2014 | 207 | 2014 |
| Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis BRG Gordon, Y Li, L Wang, A Sintsova, H Van Bakel, S Tian, WW Navarre, ... Proceedings of the National Academy of Sciences 107 (11), 5154-5159, 2010 | 202 | 2010 |
| The psychencode project S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ... Nature neuroscience 18 (12), 1707-1712, 2015 | 181 | 2015 |
| Introductions and early spread of SARS-CoV-2 in the New York City area AS Gonzalez-Reiche, MM Hernandez, MJ Sullivan, B Ciferri, ... Science 369 (6501), 297-301, 2020 | 166 | 2020 |
| Origins of the 2009 H1N1 influenza pandemic in swine in Mexico I Mena, MI Nelson, F Quezada-Monroy, J Dutta, R Cortes-Fernández, ... Elife 5, e16777, 2016 | 136 | 2016 |
| Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays MB Stead, S Marshburn, BK Mohanty, J Mitra, LP Castillo, D Ray, ... Nucleic acids research 39 (8), 3188-3203, 2011 | 107 | 2011 |
| A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription H van Bakel, K Tsui, M Gebbia, S Mnaimneh, TR Hughes, C Nislow PLoS Genet 9 (5), e1003479, 2013 | 103 | 2013 |
| Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays KN Lam, H Van Bakel, AG Cote, A Van Der Ven, TR Hughes Nucleic acids research 39 (11), 4680-4690, 2011 | 100 | 2011 |
| Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression J Fillingham, P Kainth, JP Lambert, H van Bakel, K Tsui, L Peña-Castillo, ... Molecular cell 35 (3), 340-351, 2009 | 93 | 2009 |
| Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism H van Bakel, E Strengman, C Wijmenga, FCP Holstege Physiological genomics 22 (3), 356-367, 2005 | 88 | 2005 |
| Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation A Rialdi, L Campisi, N Zhao, AC Lagda, C Pietzsch, JSY Ho, ... Science 352 (6289), 2016 | 85 | 2016 |
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
