Harm van Bakel
Harm van Bakel
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Title
Cited by
Cited by
Year
Determination and inference of eukaryotic transcription factor sequence specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
9312014
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
L Franke, H Van Bakel, L Fokkens, ED De Jong, M Egmont-Petersen, ...
The American Journal of Human Genetics 78 (6), 1011-1025, 2006
5682006
Most “dark matter” transcripts are associated with known genes
H Van Bakel, C Nislow, BJ Blencowe, TR Hughes
PLoS Biol 8 (5), e1000371, 2010
4772010
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ...
Molecular cell 32 (6), 878-887, 2008
4482008
The draft genome and transcriptome of Cannabis sativa
H Van Bakel, JM Stout, AG Cote, CM Tallon, AG Sharpe, TR Hughes, ...
Genome biology 12 (10), 1-18, 2011
4052011
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ...
Science 362 (6420), 2018
3262018
Characterization of the human ESC transcriptome by hybrid sequencing
KF Au, V Sebastiano, PT Afshar, JD Durruthy, L Lee, BA Williams, ...
Proceedings of the National Academy of Sciences 110 (50), E4821-E4830, 2013
2422013
Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets
J van de Peppel, N Kettelarij, H van Bakel, TTJP Kockelkorn, ...
Molecular cell 19 (4), 511-522, 2005
2302005
Monitoring global messenger RNA changes in externally controlled microarray experiments
J van de Peppel, P Kemmeren, H van Bakel, M Radonjic, D van Leenen, ...
EMBO reports 4 (4), 387-393, 2003
2132003
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ...
Cell 157 (3), 740-752, 2014
2072014
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
BRG Gordon, Y Li, L Wang, A Sintsova, H Van Bakel, S Tian, WW Navarre, ...
Proceedings of the National Academy of Sciences 107 (11), 5154-5159, 2010
2022010
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
1812015
Introductions and early spread of SARS-CoV-2 in the New York City area
AS Gonzalez-Reiche, MM Hernandez, MJ Sullivan, B Ciferri, ...
Science 369 (6501), 297-301, 2020
1662020
Origins of the 2009 H1N1 influenza pandemic in swine in Mexico
I Mena, MI Nelson, F Quezada-Monroy, J Dutta, R Cortes-Fernández, ...
Elife 5, e16777, 2016
1362016
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
MB Stead, S Marshburn, BK Mohanty, J Mitra, LP Castillo, D Ray, ...
Nucleic acids research 39 (8), 3188-3203, 2011
1072011
A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription
H van Bakel, K Tsui, M Gebbia, S Mnaimneh, TR Hughes, C Nislow
PLoS Genet 9 (5), e1003479, 2013
1032013
Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
KN Lam, H Van Bakel, AG Cote, A Van Der Ven, TR Hughes
Nucleic acids research 39 (11), 4680-4690, 2011
1002011
Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression
J Fillingham, P Kainth, JP Lambert, H van Bakel, K Tsui, L Peña-Castillo, ...
Molecular cell 35 (3), 340-351, 2009
932009
Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism
H van Bakel, E Strengman, C Wijmenga, FCP Holstege
Physiological genomics 22 (3), 356-367, 2005
882005
Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation
A Rialdi, L Campisi, N Zhao, AC Lagda, C Pietzsch, JSY Ho, ...
Science 352 (6289), 2016
852016
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Articles 1–20