PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, P Macklin PLoS computational biology 14 (2), e1005991, 2018 | 361 | 2018 |
Thermo‐economic‐environmental multiobjective optimization of a gas turbine power plant with preheater using evolutionary algorithm H Barzegar Avval, P Ahmadi, AR Ghaffarizadeh, MH Saidi International Journal of Energy Research 35 (5), 389-403, 2011 | 212 | 2011 |
Sensitivity analysis of energy inputs in crop production using artificial neural networks A Khoshroo, A Emrouznejad, A Ghaffarizadeh, M Kasraei, M Omid Journal of cleaner production 197, 992-998, 2018 | 111 | 2018 |
BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations A Ghaffarizadeh, SH Friedman, P Macklin Bioinformatics 32 (8), 1256-1258, 2016 | 96 | 2016 |
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow J Ozik, N Collier, JM Wozniak, C Macal, C Cockrell, SH Friedman, ... BMC bioinformatics 19, 81-97, 2018 | 64 | 2018 |
Sorting unsigned permutations by reversals using multi-objective evolutionary algorithms with variable size individuals A Ghaffarizadeh, K Ahmadi, NS Flann 2011 IEEE Congress of Evolutionary Computation (CEC), 292-295, 2011 | 43 | 2011 |
Multistable switches and their role in cellular differentiation networks A Ghaffarizadeh, NS Flann, GJ Podgorski BMC bioinformatics 15, 1-13, 2014 | 41 | 2014 |
Progress towards computational 3-d multicellular systems biology P Macklin, HB Frieboes, JL Sparks, A Ghaffarizadeh, SH Friedman, ... Systems biology of tumor microenvironment: Quantitative modeling and …, 2016 | 38 | 2016 |
Quantifying differences in cell line population dynamics using CellPD EF Juarez, R Lau, SH Friedman, A Ghaffarizadeh, E Jonckheere, ... BMC systems biology 10, 1-12, 2016 | 27 | 2016 |
Investigation on evolutionary algorithms emphasizing mass extinction A Ghaffarizadeh Shiraz University, Shiraz, Iran, 2006 | 27 | 2006 |
Optimization of combined cycle power plant using sequential quadratic programming MR Meigounpoory, P Ahmadi, AR Ghaffarizadeh, S Khanmohammadi Heat Transfer Summer Conference 48470, 109-114, 2008 | 23 | 2008 |
Cell death as a trigger for morphogenesis B Aguilar, A Ghaffarizadeh, CD Johnson, GJ Podgorski, I Shmulevich, ... PLoS One 13 (3), e0191089, 2018 | 14 | 2018 |
Improve User Retention with Causal Learning S Du, J Lee, F Ghaffarizadeh The 2019 ACM SIGKDD Workshop on Causal Discovery, 34-49, 2019 | 12 | 2019 |
Quantitative trait loci mapping problem: An Extinction-Based Multi-Objective evolutionary algorithm approach A Ghaffarizadeh, M Eftekhari, AK Esmailizadeh, NS Flann Algorithms 6 (3), 546-564, 2013 | 12 | 2013 |
MultiCellDS: a standard and a community for sharing multicellular data SH Friedman, ARA Anderson, DM Bortz, AG Fletcher, HB Frieboes, ... bioRxiv, 090696, 2016 | 11 | 2016 |
Adding crossover to extinction-based evolutionary algorithms A Ghaffarizadeh, K Ahmadi, M Eftekhari 2009 Second International Conference on Computer and Electrical Engineering …, 2009 | 11 | 2009 |
Applying attractor dynamics to infer gene regulatory interactions involved in cellular differentiation A Ghaffarizadeh, GJ Podgorski, NS Flann Biosystems 155, 29-41, 2017 | 10 | 2017 |
MultiCellDS: a community-developed standard for curating microenvironment-dependent multicellular data SH Friedman, ARA Anderson, DM Bortz, AG Fletcher, HB Frieboes, ... bioRxiv, 090456, 2016 | 10 | 2016 |
History based coalition formation in hedonic context using trust A Ghaffarizadeh, VH Allan arXiv preprint arXiv:1308.3324, 2013 | 10 | 2013 |
Agent-based simulation of large tumors in 3-D microenvironments A Ghaffarizadeh, SH Friedman, P Macklin bioRxiv, 035733, 2015 | 9 | 2015 |