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Zhi Xie
Zhi Xie
Professor in Bioinformatics and Machine learning at Sun Yat-sen University
Geverifieerd e-mailadres voor sysu.edu.cn
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Deep learning and its applications in biomedicine
C Cao, F Liu, H Tan, D Song, W Shu, W Li, Y Zhou, X Bo, Z Xie
Genomics, proteomics and bioinformatics 16 (1), 17-32, 2018
6232018
Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling
S Hu, Z Xie, A Onishi, X Yu, L Jiang, J Lin, H Rho, C Woodard
Cell 139 (3), 610-622, 2009
4452009
Global analyses of human immune variation reveal baseline predictors of postvaccination responses
JS Tsang, PL Schwartzberg, Y Kotliarov, A Biancotto, Z Xie, RN Germain, ...
Cell 157 (2), 499-513, 2014
4332014
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
CL Xiao, Y Chen, SQ Xie, KN Chen, Y Wang, Y Han, F Luo, Z Xie
nature methods 14 (11), 1072-1074, 2017
3392017
A nuclease that mediates cell death induced by DNA damage and poly (ADP-ribose) polymerase-1
Y Wang, R An, GK Umanah, H Park, K Nambiar, SM Eacker, BW Kim, ...
Science 354 (6308), aad6872, 2016
3192016
Construction of human activity-based phosphorylation networks
RH Newman, J Hu, HS Rho, Z Xie, C Woodard, J Neiswinger, C Cooper, ...
Molecular Systems Biology 9 (1), 2013
1852013
Conserved herpesvirus kinases target the DNA damage response pathway and TIP60 histone acetyltransferase to promote virus replication
R Li, J Zhu, Z Xie, G Liao, J Liu, MR Chen, S Hu, C Woodard, J Lin, ...
Cell host & microbe 10 (4), 390-400, 2011
1732011
Regulation of CK2 by phosphorylation and O-GlcNA cylation revealed by semisynthesis
MK Tarrant, HS Rho, Z Xie, YL Jiang, C Gross, JC Culhane, G Yan, J Qian, ...
Nature Chemcial Biology 8, 262-269, 2012
1722012
Ultra-low dose interleukin-2 promotes immune-modulating function of regulatory T cells and natural killer cells in healthy volunteers
S Ito, CM Bollard, M Carlsten, JJ Melenhorst, A Biancotto, E Wang, J Chen, ...
Molecular therapy 22 (7), 1388-1395, 2014
1262014
MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing
P Ye, Y Luan, K Chen, Y Liu, C Xiao, Z Xie
Nucleic acids research, gkw950, 2016
1242016
The metagenomics and metadesign of the subways and urban biomes (MetaSUB) international consortium inaugural meeting report
Microbiome 4 (1), 24, 2016
1222016
iPSCs from a hibernator provide a platform for studying cold adaptation and its potential medical applications
J Ou, JM Ball, Y Luan, T Zhao, KJ Miyagishima, Y Xu, H Zhou, J Chen, ...
Cell 173 (4), 851-863. e16, 2018
1092018
The anti-Warburg effect elicited by the cAMP-PGC1α pathway drives differentiation of glioblastoma cells into astrocytes
F Xing, Y Luan, J Cai, S Wu, J Mai, J Gu, H Zhang, K Li, Y Lin, X Xiao, ...
Cell reports 18 (2), 468-481, 2017
1022017
Functional protein microarray technology
S Hu, Z Xie, J Qian, S Blackshaw, H Zhu
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (3), 255-268, 2011
1022011
hPDI: a database of experimental human protein–DNA interactions
Z Xie, S Hu, S Blackshaw, H Zhu, J Qian
Bioinformatics 26 (2), 287-289, 2010
822010
Deciphering poxvirus gene expression by RNA sequencing and ribosome profiling
Z Yang, S Cao, CA Martens, SF Porcella, Z Xie, M Ma, B Shen, B Moss
Journal of virology 89 (13), 6874-6886, 2015
782015
Protein microarray characterization of the S-nitrosoproteome
YI Lee, D Giovinazzo, HC Kang, Y Lee, JS Jeong, PT Doulias, Z Xie, J Hu, ...
Molecular & Cellular Proteomics 13 (1), 63-72, 2014
652014
A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere shortening
M Shamay, J Liu, R Li, G Liao, L Shen, M Greenway, S Hu, J Zhu, Z Xie, ...
Journal of virology 86 (9), 5179-5191, 2012
632012
Enhancer-driven lncRNA BDNF-AS induces endocrine resistance and malignant progression of breast cancer through the RNH1/TRIM21/mTOR cascade
X Lin, X Dinglin, S Cao, S Zheng, C Wu, W Chen, Q Li, Q Hu, F Zheng, ...
Cell reports 31 (10), 2020
602020
RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling
SQ Xie, P Nie, Y Wang, H Wang, H Li, Z Yang, Y Liu, J Ren, Z Xie
Nucleic Acids Research 44 (D1), D254-D258, 2016
582016
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Artikelen 1–20