Derek Bickhart
Derek Bickhart
Research Geneticist, USDA ARS
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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ...
Genome research 17 (1), 7-15, 2007
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
Copy number variation of individual cattle genomes using next-generation sequencing
DM Bickhart, Y Hou, SG Schroeder, C Alkan, MF Cardone, ...
Genome research 22 (4), 778-790, 2012
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
O Zhaxybayeva, KS Swithers, P Lapierre, GP Fournier, DM Bickhart, ...
Proceedings of the National Academy of Sciences 106 (14), 5865-5870, 2009
Genomic characteristics of cattle copy number variations
Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang, E Kim, LK Matukumalli, ...
BMC genomics 12 (1), 127, 2011
Cattle sex-specific recombination and genetic control from a large pedigree analysis
L Ma, JR O'Connell, PM VanRaden, B Shen, A Padhi, C Sun, DM Bickhart, ...
PLoS Genet 11 (11), e1005387, 2015
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
LR Porto-Neto, TS Sonstegard, GE Liu, DM Bickhart, MVB Da Silva, ...
BMC genomics 14 (1), 876, 2013
De novo assembly of haplotype-resolved genomes with trio binning
S Koren, A Rhie, BP Walenz, AT Dilthey, DM Bickhart, SB Kingan, ...
Nature biotechnology 36 (12), 1174-1182, 2018
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle
Y Hou, GE Liu, DM Bickhart, LK Matukumalli, C Li, J Song, LC Gasbarre, ...
Functional & integrative genomics 12 (1), 81-92, 2012
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle
TS Sonstegard, JB Cole, PM VanRaden, CP Van Tassell, DJ Null, ...
PloS one 8 (1), e54872, 2013
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
Y Hou, DM Bickhart, ML Hvinden, C Li, J Song, DA Boichard, S Fritz, ...
BMC genomics 13 (1), 1-10, 2012
Genomic signatures reveal new evidences for selection of important traits in domestic cattle
L Xu, DM Bickhart, JB Cole, SG Schroeder, J Song, CPV Tassell, ...
Molecular biology and evolution 32 (3), 711-725, 2015
Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins
L Xu, JB Cole, DM Bickhart, Y Hou, J Song, PM VanRaden, ...
BMC genomics 15 (1), 683, 2014
Selecting sequence variants to improve genomic predictions for dairy cattle
PM VanRaden, ME Tooker, JR O’connell, JB Cole, DM Bickhart
Genetics Selection Evolution 49 (1), 32, 2017
Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3
MC McClure, D Bickhart, D Null, P VanRaden, L Xu, G Wiggans, G Liu, ...
PloS one 9 (3), e92769, 2014
The challenges and importance of structural variation detection in livestock
DM Bickhart, GE Liu
Frontiers in genetics 5, 37, 2014
Scaffolding of long read assemblies using long range contact information
J Ghurye, M Pop, S Koren, D Bickhart, CS Chin
BMC genomics 18 (1), 1-11, 2017
Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle
AMP O’brien, YT Utsunomiya, G Mészáros, DM Bickhart, GE Liu, ...
Genetics Selection Evolution 46 (1), 19, 2014
Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake
Y Hou, DM Bickhart, H Chung, JL Hutchison, HD Norman, EE Connor, ...
Functional & integrative genomics 12 (4), 717-723, 2012
Population-genetic properties of differentiated copy number variations in cattle
L Xu, Y Hou, DM Bickhart, Y Zhou, J Song, TS Sonstegard, ...
Scientific reports 6 (1), 1-8, 2016
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