Follow
John Eppley
John Eppley
Simons Collaboration on Ocean Processes and Ecology, University of Hawaiʻi at Mānoa
Verified email at hawaii.edu - Homepage
Title
Cited by
Cited by
Year
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
8432018
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature Microbiology 6 (1), 3-6, 2021
4562021
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
Y Shi, GW Tyson, JM Eppley, EF DeLong
The ISME journal 5 (6), 999-1013, 2010
2492010
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
EA Ottesen, CR Young, SM Gifford, JM Eppley, R Marin III, SC Schuster, ...
Science 345 (6193), 207-212, 2014
2412014
Pattern and synchrony of gene expression among sympatric marine microbial populations
EA Ottesen, CR Young, JM Eppley, JP Ryan, FP Chavez, CA Scholin, ...
Proceedings of the National Academy of Sciences 110 (6), E488-E497, 2013
2032013
Microbial community transcriptional networks are conserved in three domains at ocean basin scales
FO Aylward, JM Eppley, JM Smith, FP Chavez, CA Scholin, EF DeLong
Proceedings of the National Academy of Sciences 112 (17), 5443-5448, 2015
1902015
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
KM Fontanez, JM Eppley, TJ Samo, DM Karl, EF DeLong
Frontiers in Microbiology 6, 469, 2015
1752015
Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean
D Boeuf, BR Edwards, JM Eppley, SK Hu, KE Poff, AE Romano, DA Caron, ...
Proceedings of the National Academy of Sciences 116 (24), 11824-11832, 2019
1612019
Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean
SA Lincoln, B Wai, JM Eppley, MJ Church, RE Summons, EF DeLong
Proceedings of the National Academy of Sciences 111 (27), 9858-9863, 2014
1572014
Environmental drivers of a microbial genomic transition zone in the ocean’s interior
DR Mende, JA Bryant, FO Aylward, JM Eppley, T Nielsen, DM Karl, ...
Nature Microbiology, 1, 2017
1522017
Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
JA Bryant, FJ Stewart, JM Eppley, EF DeLong
Ecology 93 (7), 1659-1673, 2012
1272012
Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone
FO Aylward, D Boeuf, DR Mende, EM Wood-Charlson, A Vislova, ...
Proceedings of the National Academy of Sciences 114 (43), 11446-11451, 2017
1242017
Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera
ST Wilson, FO Aylward, F Ribalet, B Barone, JR Casey, PE Connell, ...
Nature microbiology 2 (9), 1-9, 2017
1092017
Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities
J Beaulaurier, E Luo, JM Eppley, P Den Uyl, X Dai, A Burger, DJ Turner, ...
Genome Research 30 (3), 437-446, 2020
932020
Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre
JA Bryant, FO Aylward, JM Eppley, DM Karl, MJ Church, EF DeLong
The ISME journal 10 (6), 1308-1322, 2016
892016
Genetic exchange across a species boundary in the archaeal genus Ferroplasma
JM Eppley, GW Tyson, WM Getz, JF Banfield
Genetics 177 (1), 407-416, 2007
832007
Microbial dynamics of elevated carbon flux in the open ocean’s abyss
KE Poff, AO Leu, JM Eppley, DM Karl, EF DeLong
Proceedings of the National Academy of Sciences 118 (4), 2021
822021
Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
762021
Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
FJ Stewart, AK Sharma, JA Bryant, JM Eppley, EF DeLong
Genome Biology 12 (3), 1-24, 2011
722011
Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column
E Luo, JM Eppley, AE Romano, DR Mende, EF DeLong
The ISME Journal 14 (5), 1304-1315, 2020
702020
The system can't perform the operation now. Try again later.
Articles 1–20