| Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020 | 1506 | 2020 |
| Improving marginal likelihood estimation for Bayesian phylogenetic model selection W Xie, PO Lewis, Y Fan, L Kuo, MH Chen Systematic Biology, syq085, 2010 | 1042 | 2010 |
| The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 847 | 2020 |
| The somatic genomic landscape of chromophobe renal cell carcinoma CF Davis, CJ Ricketts, M Wang, L Yang, AD Cherniack, H Shen, C Buhay, ... Cancer cell 26 (3), 319-330, 2014 | 804 | 2014 |
| Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ... Cancer cell 29 (5), 723-736, 2016 | 637 | 2016 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 317 | 2015 |
| MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data Y Fan, L Xi, DST Hughes, J Zhang, J Zhang, PA Futreal, DA Wheeler, ... Genome Biology 17 (1), 178, 2016 | 273 | 2016 |
| Choosing among partition models in Bayesian phylogenetics Y Fan, R Wu, MH Chen, L Kuo, PO Lewis Molecular biology and evolution 28 (1), 523-532, 2011 | 224 | 2011 |
| An ensemble approach to accurately detect somatic mutations using SomaticSeq LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ... Genome biology 16 (1), 1-13, 2015 | 115 | 2015 |
| Neutral tumor evolution? M Tarabichi, I Martincorena, M Gerstung, AM Leroi, F Markowetz, ... Nature genetics 50 (12), 1630-1633, 2018 | 76 | 2018 |
| Rare variant detection using family-based sequencing analysis G Peng, Y Fan, TB Palculict, P Shen, EC Ruteshouser, AK Chi, RW Davis, ... Proceedings of the National Academy of Sciences 110 (10), 3985-3990, 2013 | 67 | 2013 |
| Posterior predictive Bayesian phylogenetic model selection PO Lewis, W Xie, MH Chen, Y Fan, L Kuo Systematic biology 63 (3), 309-321, 2014 | 53 | 2014 |
| Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... BioRxiv, 312041, 2018 | 43 | 2018 |
| Identification of germline DICER1 mutations and loss of heterozygosity in familial Wilms tumour TB Palculict, EC Ruteshouser, Y Fan, W Wang, L Strong, V Huff Journal of Medical Genetics, jmedgenet-2015-103311, 2015 | 42 | 2015 |
| Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales … NJ Wickett, Y Fan, PO Lewis, B Goffinet Journal of molecular evolution 67 (1), 111-122, 2008 | 34 | 2008 |
| Evolution and mutations predisposing to daptomycin resistance in vancomycin-resistant Enterococcus faecium ST736 strains G Wang, F Yu, H Lin, K Murugesan, W Huang, AG Hoss, A Dhand, LY Lee, ... PloS one 13 (12), 2018 | 32 | 2018 |
| Multiplex target capture with double-stranded DNA probes P Shen, W Wang, AK Chi, Y Fan, RW Davis, C Scharfe Genome Med 5, 50, 2013 | 24 | 2013 |
| FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units G Peng, Y Fan, W Wang PLOS Comput Biol 10 (10), e1003880, 2014 | 18 | 2014 |
| Phylogenetic relationships of five species of Dorippinae (Crustacea, Decapoda) revealed by 16S rDNA sequence analysis Y FAN, X LI, L SONG, Z CAI Acta oceanologica sinica 23 (3), 513-519, 2004 | 7 | 2004 |
| A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks H van Aggelen, R Kolde, H Chamarthi, J Loving, Y Fan, JT Fallon, ... Scientific reports 9 (1), 1-10, 2019 | 6 | 2019 |
Paul O. LewisProfessor of Ecology and Evolutionary Biology, University of ConnecticutVerified email at uconn.edu
