| Functional protein representations from biological networks enable diverse cross-species inference J Fan, A Cannistra, I Fried, T Lim, T Schaffner, M Crovella, B Hescott, ... Nucleic acids research 47 (9), e51-e51, 2019 | 27 | 2019 |
| A Multi-species Functional Embedding Integrating Sequence and Network Structure M Leiserson, J Fan, A Cannistra, I Fried, T Lim, T Schaffner, M Crovella, ... Research in Computational Molecular Biology, 263, 0 | 10* | |
| Spectrum preserving tilings enable sparse and modular reference indexing J Fan, J Khan, GE Pibiri, R Patro International Conference on Research in Computational Molecular Biology, 21-40, 2023 | 8 | 2023 |
| Fulgor: A fast and compact k-mer index for large-scale matching and color queries J Fan, J Khan, NP Singh, GE Pibiri, R Patro Algorithms for Molecular Biology 19 (1), 1-21, 2024 | 6 | 2024 |
| Perplexity: evaluating transcript abundance estimation in the absence of ground truth J Fan, S Chan, R Patro Algorithms for Molecular Biology 17 (1), 6, 2022 | 2 | 2022 |
| ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures N Franzese, J Fan, R Sharan, MDM Leiserson Journal of Computational Biology 29 (1), 56-73, 2022 | 2 | 2022 |
| Meta-colored compacted de Bruijn graphs GE Pibiri, J Fan, R Patro bioRxiv, 2023.07. 21.550101, 2023 | 1 | 2023 |
| Meta-colored compacted de Bruijn graphs: overview and challenges GE Pibiri, J Fan, R Patro Biorxiv: the Preprint Server for Biology, 2023 | 1 | 2023 |
| Matrix (factorization) reloaded: flexible methods for imputing genetic interactions with cross-species and side information J Fan, XC Li, M Crovella, MDM Leiserson Bioinformatics 36 (Supplement_2), i866-i874, 2020 | 1 | 2020 |
| Tree-based differential testing using inferential uncertainty for RNA-Seq NP Singh, EY Wu, J Fan, MI Love, R Patro bioRxiv, 2023.12. 25.573288, 2023 | | 2023 |
Mark CrovellaProfessor of Computer Science and Computing & Data Sciences, Boston UniversityVerified email at cs.bu.edu
