Follow
John Deck
John Deck
University of California at Berkeley, Berkeley Natural History Museums
Verified email at berkeley.edu
Title
Cited by
Cited by
Year
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
RL Walls, J Deck, R Guralnick, S Baskauf, R Beaman, S Blum, S Bowers, ...
PloS one 9 (3), e89606, 2014
1742014
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
1432017
The effect of urbanization on plant phenology depends on regional temperature
D Li, BJ Stucky, J Deck, B Baiser, RP Guralnick
Nature Ecology & Evolution 3 (12), 1661-1667, 2019
992019
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
J Deck, MR Gaither, R Ewing, CE Bird, N Davies, C Meyer, C Riginos, ...
PLoS biology 15 (8), e2002925, 2017
962017
The plant phenology ontology: a new informatics resource for large-scale integration of plant phenology data
BJ Stucky, R Guralnick, J Deck, EG Denny, K Bolmgren, R Walls
Frontiers in Plant Science 9, 346008, 2018
802018
The global genome biodiversity network (GGBN) data standard specification
G Droege, K Barker, O Seberg, J Coddington, E Benson, WG Berendsohn, ...
Database 2016, baw125, 2016
662016
Community next steps for making globally unique identifiers work for biocollections data
RP Guralnick, N Cellinese, J Deck, RL Pyle, J Kunze, L Penev, R Walls, ...
ZooKeys, 133, 2015
612015
The founding charter of the Genomic Observatories Network
N Davies, D Field, L Amaral-Zettler, MS Clark, J Deck, A Drummond, ...
GigaScience 3 (1), 2047-217X-3-2, 2014
502014
Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for …
C Riginos, ED Crandall, L Liggins, MR Gaither, RB Ewing, C Meyer, ...
Molecular Ecology Resources 20 (6), 1458-1469, 2020
462020
The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices
R Guralnick, T Conlin, J Deck, BJ Stucky, N Cellinese
PloS one 9 (12), e114069, 2014
322014
A call for an international network of genomic observatories (GOs)
N Davies, C Meyer, JA Gilbert, L Amaral-Zettler, J Deck, M Bicak, ...
GigaScience 1 (1), 2047-217X-1-5, 2012
312012
Integrating herbarium specimen observations into global phenology data systems
L Brenskelle, BJ Stucky, J Deck, R Walls, RP Guralnick
Applications in Plant Sciences 7 (3), e01231, 2019
282019
Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium
N Davies, D Field, D Gavaghan, SJ Holbrook, S Planes, M Troyer, ...
GigaScience 5 (1), s13742-016-0118-5, 2016
212016
The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web
BJ Stucky, J Deck, T Conlin, L Ziemba, N Cellinese, R Guralnick
BMC bioinformatics 15, 1-9, 2014
182014
Internet of Samples (iSamples): Toward an interdisciplinary cyberinfrastructure for material samples
N Davies, J Deck, EC Kansa, SW Kansa, J Kunze, C Meyer, T Orrell, ...
GigaScience 10 (5), giab028, 2021
152021
Importance of timely metadata curation to the global surveillance of genetic diversity
ED Crandall, RH Toczydlowski, L Liggins, AE Holmes, M Ghoojaei, ...
Conservation Biology 37 (4), e14061, 2023
142023
Lessons learned from adapting the Darwin Core vocabulary standard for use in RDF
SJ Baskauf, J Wieczorek, J Deck, CO Webb
Semantic Web 7 (6), 617-627, 2016
142016
Meeting report: advancing practical applications of biodiversity ontologies
RL Walls, R Guralnick, J Deck, A Buntzman, PL Buttigieg, N Davies, ...
Standards in Genomic Sciences 9 (1), 1-10, 2014
132014
Meeting Report: GBIF hackathon-workshop on Darwin Core and sample data (22–24 May 2013)
J Wieczorek, O Bánki, S Blum, J Deck, M Döring, G Dröge, D Endresen, ...
Standards in Genomic Sciences 9, 585-598, 2014
112014
Community next steps for making globally unique identifiers work for biocollections data. ZooKeys 494: 133–154
RP Guralnick, N Cellinese, J Deck, RL Pyle, J Kunze, L Penev, R Walls, ...
102015
The system can't perform the operation now. Try again later.
Articles 1–20