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Yoann DUFRESNE
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Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring
T Cordier, D Forster, Y Dufresne, CIM Martins, T Stoeck, J Pawlowski
Molecular Ecology Resources 18 (6), 1381-1391, 2018
1022018
Norine: Update of the nonribosomal peptide resource
A Flissi, E Ricart, C Campart, M Chevalier, Y Dufresne, J Michalik, ...
Nucleic Acids Research 48 (D1), D465-D469, 2020
612020
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
A Flissi, Y Dufresne, J Michalik, L Tonon, S Janot, L Noé, P Jacques, ...
Nucleic acids research 44 (D1), D1113-D1118, 2016
552016
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
Y Dufresne, F Lejzerowicz, LA Perret-Gentil, J Pawlowski, T Cordier
BMC bioinformatics 20 (1), 1-6, 2019
442019
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes
P Pericard, Y Dufresne, L Couderc, S Blanquart, H Touzet
Bioinformatics 34 (4), 585-591, 2018
312018
Norine: A powerful resource for novel nonribosomal peptide discovery
M Pupin, Q Esmaeel, A Flissi, Y Dufresne, P Jacques, V Leclère
Synthetic and systems biotechnology 1 (2), 89-94, 2016
312016
Smiles2Monomers: a link between chemical and biological structures for polymers
Y Dufresne, L Noé, V Leclère, M Pupin
Journal of cheminformatics 7 (1), 1-11, 2015
192015
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing (2016) Nucleic Acids Res., 44, pp
A Flissi, Y Dufresne, J Michalik, L Tonon, S Janot, L Noé, P Jacques, ...
D1113-D1118, 0
6
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
Y Dufresne, T Lemane, P Marijon, P Peterlongo, A Rahman, M Kokot, ...
Bioinformatics 38 (18), 4423-4425, 2022
22022
A Graph-Theoretic Barcode Ordering Model for Linked-Reads
Y Dufresne, C Sun, P Marijon, D Lavenier, C Chauve, R Chikhi
WABI 2020-20th Workshop on Algorithms in Bioinformatics, 11-12, 2020
12020
Reconstruction of full-length 16S rRNA sequences for taxonomic assignment in metagenomics
P Pericard, Y Dufresne, S Blanquart, H Touzet
JOBIM 2017-Journées Ouvertes en Biologie, Informatique et Mathématiques, 2017
12017
Efficient dynamic associative dictionary for large k-mer sets
Y Dufresne, C Marchet, R Chikhi, A Limasset
BMC BIOINFORMATICS 21 (SUPPL 20), 2020
2020
Read correction for non-uniform coverages
C Marchet, Y Dufresne, A Limasset
bioRxiv, 673624, 2019
2019
Bioconvert: a collaborative bioinformatics format converter library
T Cokelaer, A Biton, B Brancotte, Y Dufresne, KH Hillion, E Kornobis, ...
F1000Research 7, 2018
2018
Norine, Florine, s2m: powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities
Q Esmaeel, Y Dufresne, A Flissi, M Pupin, P Jacques, V Leclère
2017
Data updates on Norine, the reference Non-Ribosomal Peptide knowledge base
Y Dufresne, J Michalik, A Flissi, V Leclère, M Pupin
JOBIM 2017-Journées Ouvertes en Biologie, Informatique et Mathématiques, 2017
2017
Algorithmique pour l’annotation automatique de peptides non ribosomiques
Y Dufresne
Lille1, 2016
2016
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes Supplementary Material
P Pericard, Y Dufresne, L Couderc, S Blanquart, H Touzet
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Articles 1–18