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Gerardo Tauriello
Gerardo Tauriello
Biozentrum University of Basel - SIB Swiss Institute of Bioinformatics
Geverifieerd e-mailadres voor unibas.ch
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SWISS-MODEL: homology modelling of protein structures and complexes
A Waterhouse, M Bertoni, S Bienert, G Studer, G Tauriello, R Gumienny, ...
Nucleic acids research 46 (W1), W296-W303, 2018
95872018
The SWISS-MODEL Repository—new features and functionality
S Bienert, A Waterhouse, TAP De Beer, G Tauriello, G Studer, L Bordoli, ...
Nucleic acids research 45 (D1), D313-D319, 2017
15692017
MorphoGraphX: A platform for quantifying morphogenesis in 4D
P Barbier de Reuille, AL Routier-Kierzkowska, D Kierzkowski, GW Bassel, ...
elife 4, e05864, 2015
4482015
ProMod3—A versatile homology modelling toolbox
G Studer, G Tauriello, S Bienert, M Biasini, N Johner, T Schwede
PLoS computational biology 17 (1), e1008667, 2021
1802021
Antagonistic growth regulation by Dpp and Fat drives uniform cell proliferation
G Schwank, G Tauriello, R Yagi, E Kranz, P Koumoutsakos, K Basler
Developmental cell 20 (1), 123-130, 2011
782011
Continuous Automated Model EvaluatiOn (CAMEO)—Perspectives on the future of fully automated evaluation of structure prediction methods
X Robin, J Haas, R Gumienny, A Smolinski, G Tauriello, T Schwede
Proteins: Structure, Function, and Bioinformatics 89 (12), 1977-1986, 2021
512021
SEM++: A particle model of cellular growth, signaling and migration
F Milde, G Tauriello, H Haberkern, P Koumoutsakos
Computational Particle Mechanics 1, 211-227, 2014
452014
Variability and constancy in cellular growth of Arabidopsis sepals
G Tauriello, HM Meyer, RS Smith, P Koumoutsakos, AHK Roeder
Plant physiology 169 (4), 2342-2358, 2015
402015
Fusing heterogeneous data for the calibration of molecular dynamics force fields using hierarchical Bayesian models
S Wu, P Angelikopoulos, G Tauriello, C Papadimitriou, P Koumoutsakos
The Journal of chemical physics 145 (24), 2016
352016
A comprehensive mapping of the druggable cavities within the SARS-CoV-2 therapeutically relevant proteins by combining pocket and docking searches as implemented in pockets 2.0
S Gervasoni, G Vistoli, C Talarico, C Manelfi, AR Beccari, G Studer, ...
International journal of molecular sciences 21 (14), 5152, 2020
332020
Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO)
J Haas, R Gumienny, A Barbato, F Ackermann, G Tauriello, M Bertoni, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1378-1387, 2019
332019
Global genomic analysis of SARS-CoV-2 RNA dependent RNA polymerase evolution and antiviral drug resistance
A Mari, T Roloff, M Stange, KK Søgaard, E Asllanaj, G Tauriello, ...
Microorganisms 9 (5), 1094, 2021
29*2021
Modeling of protein tertiary and quaternary structures based on evolutionary information
G Studer, G Tauriello, S Bienert, AM Waterhouse, M Bertoni, L Bordoli, ...
Computational Methods in Protein Evolution, 301-316, 2019
202019
Particle simulations of morphogenesis
P Koumoutsakos, B Bayati, F Milde, G Tauriello
Mathematical Models and Methods in Applied Sciences 21 (supp01), 955-1006, 2011
202011
Uncovering new families and folds in the natural protein universe
J Durairaj, AM Waterhouse, T Mets, T Brodiazhenko, M Abdullah, ...
Nature 622 (7983), 646-653, 2023
182023
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
M Varadi, S Nair, I Sillitoe, G Tauriello, S Anyango, S Bienert, C Borges, ...
GigaScience 11, giac118, 2022
102022
ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models
B Vallat, G Tauriello, S Bienert, J Haas, BM Webb, A Žídek, W Zheng, ...
Journal of molecular biology 435 (14), 168021, 2023
92023
Coupling remeshed particle and phase field methods for the simulation of reaction-diffusion on the surface and the interior of deforming geometries
G Tauriello, P Koumoutsakos
SIAM Journal on Scientific Computing 35 (6), B1285-B1303, 2013
82013
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study
H Schweke, Q Xu, G Tauriello, L Pantolini, T Schwede, F Cazals, ...
Proteomics 23 (17), 2200323, 2023
52023
Assessment of the assessment—All about complexes
G Studer, G Tauriello, T Schwede
Proteins: Structure, Function, and Bioinformatics 91 (12), 1850-1860, 2023
42023
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Artikelen 1–20