Clément - Marie Train
Clément - Marie Train
PhD student, UNIL Lausannne
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The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz
Bioinformatics 33 (14), i75-i82, 2017
iHam and pyHam: visualizing and processing hierarchical orthologous groups
CM Train, M Pignatelli, A Altenhoff, C Dessimoz
Bioinformatics 35 (14), 2504-2506, 2019
Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree
B Boeckmann, D Dylus, S Moretti, A Altenhoff, CM Train, E Kriventseva, ...
biorxiv, 181966, 2017
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ...
Nucleic acids research, 2020
New genome assembly of the barn owl (Tyto alba alba)
AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ...
Ecology and evolution 10 (5), 2284-2298, 2020
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome
I Piližota, CM Train, A Altenhoff, H Redestig, C Dessimoz
Bioinformatics 35 (7), 1159-1166, 2019
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