Edans Sandes
Edans Sandes
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CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences
EFO Sandes, ACMA de Melo
Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 2010
772010
Retrieving smith-waterman alignments with optimizations for megabase biological sequences using GPU
EFO Sandes, ACMA de Melo
IEEE Transactions on Parallel and Distributed Systems 24 (5), 1009-1021, 2012
722012
Smith-waterman alignment of huge sequences with gpu in linear space
EFO Sandes, ACMA de Melo
2011 IEEE International Parallel & Distributed Processing Symposium, 1199-1211, 2011
602011
CUDAlign 4.0: Incremental speculative traceback for exact chromosome-wide alignment in GPU clusters
EF de Oliveira Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ...
IEEE Transactions on Parallel and Distributed Systems 27 (10), 2838-2850, 2016
392016
CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters
FO Edans, G Miranda, ACMA de Melo, X Martorell, E Ayguadé
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
312014
Parallel optimal pairwise biological sequence comparison: algorithms, platforms, and classification
EFDO Sandes, A Boukerche, ACMAD Melo
ACM Computing Surveys (CSUR) 48 (4), 1-36, 2016
242016
An exact parallel algorithm to compare very long biological sequences in clusters of workstations
A Boukerche, ACMA de Melo, EF de Oliveira Sandes, M Ayala-Rincon
Cluster Computing 10 (2), 187-202, 2007
242007
MASA: a multiplatform architecture for sequence aligners with block pruning
EF De O. Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ...
ACM Transactions on Parallel Computing (TOPC) 2 (4), 1-31, 2016
172016
Logical model of relationship for online social networks and performance optimizing of queries
EFO De Sandes, L Weigang, ACMA de Melo
International Conference on Web Information Systems Engineering, 726-736, 2012
162012
Querying dynamic communities in online social networks
L Weigang, EFO Sandes, J Zheng, ACMA de MELO, L Uden
Journal of Zhejiang University Science C 15 (2), 81-90, 2014
122014
Bioinformatics of the Paracoccidioides brasiliensis EST Project
MM Brígido, MEMT Walter, AG Oliveira, MK Inoue, DS Anjos, EFO Sandes, ...
FUNPEC-RP, 2005
112005
An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison
EFO Sandes, CG Ralha, ACMA de Melo
Expert Systems with Applications 41 (10), 4929-4938, 2014
82014
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs
EF de O. Sandes, G Miranda, ACMA Melo, X Martorell, E Ayguade
Proceedings of the 19th ACM SIGPLAN symposium on Principles and practice of …, 2014
72014
de Melo. CUD-Align: using GPU to accelerate the comparison of megabase genomic sequences
EFO Sandes, MA Alba Cristina
Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 0
7
Formalization of block pruning: Reducing the number of cells computed in exact biological sequence comparison algorithms
EFO Sandes, GLM Teodoro, MEMT Walter, X Martorell, E Ayguade, ...
The Computer Journal 61 (5), 687-713, 2018
52018
Algoritmos paralelos exatos e otimizações para alinhamento de sequências biológicas longas em plataformas de alto desempenho
EFO Sandes
52015
DNA sequences alignment in multi-GPUs: acceleration and energy payoff
J Pérez-Serrano, E Sandes, ACMA de Melo, M Ujaldón
BMC bioinformatics 19 (14), 161-176, 2018
42018
Smith-waterman acceleration in multi-gpus: a performance per watt analysis
JP Serrano, EFDO Sandes, ACMA de Melo, M Ujaldón
International Conference on Bioinformatics and Biomedical Engineering, 512-523, 2017
42017
Parallel megabase dna sequence comparison with opencl
MAC De Figueiredo, FO Edans, ACMA De Melo
2015 IEEE 22nd International Conference on High Performance Computing (HiPC …, 2015
42015
Comparação paralela de sequências biológicas longas utilizando Unidades de Processamento Gráfico (GPUs)
EFO Sandes
32011
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Artikelen 1–20