Åsa K Björklund

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Rickard SandbergProfessor, Karolinska InstitutetVerified email at ki.se
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se
Simone PicelliVerified email at iob.ch
Omid FaridaniUNSW, Garvan Institute, Karolinska InstituteVerified email at unsw.edu.au
Jenny MjösbergProfessor, Group leader, Center for Infectious Medicine, Department of Medicine HuddingeVerified email at ki.se
Thomas PerlmannKarolinska InstitutetVerified email at ki.se
Markus RingnérScience for Life Laboratory and Lund UniversityVerified email at scilifelab.se
Malin ParmarLund UniversityVerified email at med.lu.se
Sara NolbrantPostdoc, UCSFVerified email at ucsf.edu
Stefania GiacomelloSciLifeLab/KTHVerified email at scilifelab.se
Björn ReiniusAssociate Professor, Karolinska Institutet, Department of Medical Biochemistry and BiophysicsVerified email at ki.se
Andrew D. MooreEvolutionary Bioinformatics GroupVerified email at uni-muenster.de
Erich Bornberg-BauerProfessor of Molecular Evolution and Bioinformatics, University of muenster, GermanyVerified email at uni-muenster.de
Leif Väremo WiggeDiscovery Sciences, Data Sciences & Quantitative Biology, AstraZenecaVerified email at astrazeneca.com
Jakob TheorellPostdoctoral researcher, Karolinska Institutet, University of OxfordVerified email at ki.se
Nikolay OskolkovLund UniversityVerified email at scilifelab.se
Kristian PietrasProfessor, Lund University, SwedenVerified email at med.lu.se
Agnete KirkebyHuman Neural Development group, The Novo Nordisk Foundation Center for Stem Cell Medicine, reNEWVerified email at sund.ku.dk
David van BruggenPostdoctoral researcher, Harvard UniversityVerified email at fas.harvard.edu
Rauan SagitAtlas Antibodies ABVerified email at atlasantibodies.com

Åsa K Björklund

Bioinformatic researcher at Science for Life Laboratory, NBIS, Uppsala University

Verified email at scilifelab.se

Bioinformatics molecular biology transcriptomics single cell


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Full-length RNA-seq from single cells using Smart-seq2 S Picelli, OR Faridani, ÅK Björklund, G Winberg, S Sagasser, R Sandberg Nature protocols 9 (1), 171-181, 2014	2659	2014
Smart-seq2 for sensitive full-length transcriptome profiling in single cells S Picelli, ÅK Björklund, OR Faridani, S Sagasser, G Winberg, R Sandberg Nature methods 10 (11), 1096-1098, 2013	1757	2013
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects S Picelli, ÅK Björklund, B Reinius, S Sagasser, G Winberg, R Sandberg Genome research 24 (12), 2033-2040, 2014	572	2014
The heterogeneity of human CD127+ innate lymphoid cells revealed by single-cell RNA sequencing ÅK Björklund, M Forkel, S Picelli, V Konya, J Theorell, D Friberg, ... Nature immunology 17 (4), 451-460, 2016	405	2016
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? D Ekman, S Light, ÅK Björklund, A Elofsson Genome biology 7 (6), 1-13, 2006	403	2006
Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing M Bartoschek, N Oskolkov, M Bocci, J Lövrot, C Larsson, M Sommarin, ... Nature communications 9 (1), 1-13, 2018	340	2018
Expansion of protein domain repeats ÅK Björklund, D Ekman, A Elofsson PLoS computational biology 2 (8), e114, 2006	257	2006
Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions D Ekman, ÅK Björklund, J Frey-Skött, A Elofsson Journal of molecular biology 348 (1), 231-243, 2005	250	2005
Arrangements in the modular evolution of proteins AD Moore, ÅK Björklund, D Ekman, E Bornberg-Bauer, A Elofsson Trends in biochemical sciences 33 (9), 444-451, 2008	226	2008
Domain rearrangements in protein evolution ÅK Björklund, D Ekman, S Light, J Frey-Skött, A Elofsson Journal of molecular biology 353 (4), 911-923, 2005	218	2005
Transcriptional convergence of oligodendrocyte lineage progenitors during development S Marques, D van Bruggen, DP Vanichkina, EM Floriddia, H Munguba, ... Developmental cell 46 (4), 504-517. e7, 2018	151	2018
Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development K Tiklová, ÅK Björklund, L Lahti, A Fiorenzano, S Nolbrant, L Gillberg, ... Nature communications 10 (1), 1-12, 2019	138	2019
Prostaglandin E2 suppresses human group 2 innate lymphoid cell function J Maric, A Ravindran, L Mazzurana, ÅK Björklund, A Van Acker, A Rao, ... Journal of Allergy and Clinical Immunology 141 (5), 1761-1773. e6, 2018	111	2018
Single-cell analysis reveals a close relationship between differentiating dopamine and subthalamic nucleus neuronal lineages N Kee, N Volakakis, A Kirkeby, L Dahl, H Storvall, S Nolbrant, L Lahti, ... Cell stem cell 20 (1), 29-40, 2017	111	2017
Quantification of the elevated rate of domain rearrangements in metazoa D Ekman, ÅK Björklund, A Elofsson Journal of molecular biology 372 (5), 1337-1348, 2007	101	2007
Neuropilin-1 is expressed on lymphoid tissue residing LTi-like group 3 innate lymphoid cells and associated with ectopic lymphoid aggregates MM Shikhagaie, ÅK Björklund, J Mjösberg, JS Erjefält, AS Cornelissen, ... Cell reports 18 (7), 1761-1773, 2017	86	2017
Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins ÅK Björklund, D Soeria-Atmadja, A Zorzet, U Hammerling, MG Gustafsson Bioinformatics 21 (1), 39-50, 2005	86	2005
A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens I Abdullayev, M Kirkham, ÅK Björklund, A Simon, R Sandberg Experimental cell research 319 (8), 1187-1197, 2013	56	2013
Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing L Mazzurana, P Czarnewski, V Jonsson, L Wigge, M Ringnér, TC Williams, ... Cell research 31 (5), 554-568, 2021	55	2021
Nebulin: a study of protein repeat evolution ÅK Björklund, S Light, R Sagit, A Elofsson Journal of molecular biology 402 (1), 38-51, 2010	48	2010

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