Victor Greiff
Victor Greiff
Associate Professor, Laboratory for Computational and Systems Immunology, University of Oslo
Geverifieerd e-mailadres voor medisin.uio.no - Homepage
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Bioinformatic and statistical analysis of adaptive immune repertoires
V Greiff, E Miho, U Menzel, ST Reddy
Trends in immunology 36 (11), 738-749, 2015
1072015
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
V Greiff, P Bhat, SC Cook, U Menzel, W Kang, ST Reddy
Genome medicine 7 (1), 1-15, 2015
1012015
Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires
E Miho, A Yermanos, CR Weber, CT Berger, ST Reddy, V Greiff
Frontiers in immunology 9, 224, 2018
802018
Systems analysis reveals high genetic and antigen-driven predetermination of antibody repertoires throughout B cell development
V Greiff, U Menzel, E Miho, C Weber, R Riedel, S Cook, A Valai, T Lopes, ...
Cell reports 19 (7), 1467-1478, 2017
782017
Adaptive immune receptor repertoire community recommendations for sharing immune-repertoire sequencing data
F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ...
Nature immunology 18 (12), 1274-1278, 2017
762017
Learning the high-dimensional immunogenomic features that predict public and private antibody repertoires
V Greiff, CR Weber, J Palme, U Bodenhofer, E Miho, U Menzel, ST Reddy
The Journal of Immunology 199 (8), 2985-2997, 2017
552017
Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
V Greiff, U Menzel, U Haessler, SC Cook, S Friedensohn, TA Khan, ...
BMC immunology 15 (1), 1-14, 2014
512014
Comprehensive evaluation and optimization of amplicon library preparation methods for high-throughput antibody sequencing
U Menzel, V Greiff, TA Khan, U Haessler, I Hellmann, S Friedensohn, ...
PloS one 9 (5), e96727, 2014
482014
Large-scale network analysis reveals the sequence space architecture of antibody repertoires
E Miho, V Greiff, ST Reddy
Nature communications 10 (1), 1-11, 2019
40*2019
High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis
DM Mason, CR Weber, C Parola, SM Meng, V Greiff, WJ Kelton, ...
Nucleic acids research 46 (14), 7436-7449, 2018
312018
Resident memory CD8 T cells persist for years in human small intestine
R Bartolomé-Casado, OJB Landsverk, SK Chauhan, L Richter, D Phung, ...
Journal of Experimental Medicine 216 (10), 2412-2426, 2019
292019
Inferred allelic variants of immunoglobulin receptor genes: a system for their evaluation, documentation, and naming
M Ohlin, C Scheepers, M Corcoran, WD Lees, CE Busse, D Bagnara, ...
Frontiers in immunology 10, 435, 2019
282019
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires
AJ Brown, I Snapkov, R Akbar, M Pavlović, E Miho, GK Sandve, V Greiff
Molecular Systems Design & Engineering 4 (4), 701-736, 2019
232019
Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim)
A Yermanos, V Greiff, NJ Krautler, U Menzel, A Dounas, E Miho, ...
Bioinformatics 33 (24), 3938-3946, 2017
172017
Hopfield networks is all you need
H Ramsauer, B Schäfl, J Lehner, P Seidl, M Widrich, L Gruber, ...
arXiv preprint arXiv:2008.02217, 2020
132020
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ...
bioRxiv, 759498, 2019
12*2019
Risk factors for pneumocystis pneumonia in giant cell arteritis: a single-centre cohort study
CT Berger, V Greiff, S John, KF Koenig, MB Bigler, M Recher, C Hess, ...
Clin Exp Rheumatol 33 (2 Suppl 89), 122, 2015
122015
A minimal model of peptide binding predicts ensemble properties of serum antibodies
V Greiff, H Redestig, J Luck, N Bruni, A Valai, S Hartmann, S Rausch, ...
BMC Genomics 13 (1), 79, 2012
122012
immuneSIM: tunable multi-feature simulation of B-and T-cell receptor repertoires for immunoinformatics benchmarking
CR Weber, R Akbar, A Yermanos, M Pavlović, I Snapkov, GK Sandve, ...
Bioinformatics 36 (11), 3594-3596, 2020
112020
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences
E Smakaj, L Babrak, M Ohlin, M Shugay, B Briney, D Tosoni, C Galli, ...
Bioinformatics 36 (6), 1731-1739, 2020
92020
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Artikelen 1–20