| Advances in GPCR modeling evaluated by the GPCR Dock 2013 assessment: meeting new challenges I Kufareva, V Katritch, RC Stevens, R Abagyan Structure 22 (8), 1120-1139, 2014 | 185 | 2014 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Mechanism of transmembrane signaling by sensor histidine kinases I Gushchin, I Melnikov, V Polovinkin, A Ishchenko, A Yuzhakova, ... Science 356 (6342), eaah6345, 2017 | 160 | 2017 |
| Pepsi-SAXS: an adaptive method for rapid and accurate computation of small-angle X-ray scattering profiles S Grudinin, M Garkavenko, A Kazennov Acta Crystallographica Section D: Structural Biology 73 (5), 449-464, 2017 | 129 | 2017 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 123 | 2019 |
| Deep convolutional networks for quality assessment of protein folds G Derevyanko, S Grudinin, Y Bengio, G Lamoureux Bioinformatics 34 (23), 4046-4053, 2018 | 119 | 2018 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 115 | 2013 |
| Protein model quality assessment using 3D oriented convolutional neural networks G Pagès, B Charmettant, S Grudinin Bioinformatics, 2019 | 102 | 2019 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 100 | 2021 |
| Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution AH Larsen, Y Wang, S Bottaro, S Grudinin, L Arleth, K Lindorff-Larsen PLoS computational biology 16 (4), e1007870, 2020 | 89 | 2020 |
| NOLB: nonlinear rigid block normal-mode analysis method A Hoffmann, S Grudinin Journal of chemical theory and computation 13 (5), 2123-2134, 2017 | 75 | 2017 |
| Smooth orientation-dependent scoring function for coarse-grained protein quality assessment M Karasikov, G Pagès, S Grudinin Bioinformatics 35 (16), 2801-2808, 2019 | 68 | 2019 |
| Water molecules and hydrogen-bonded networks in bacteriorhodopsin—molecular dynamics simulations of the ground state and the M-intermediate S Grudinin, G Büldt, V Gordeliy, A Baumgaertner Biophysical journal 88 (5), 3252-3261, 2005 | 66 | 2005 |
| Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 62 | 2014 |
| Unique DC-SIGN clustering activity of a small glycomimetic: A lesson for ligand design I Sutkeviciute, M Thépaut, S Sattin, A Berzi, J McGeagh, S Grudinin, ... ACS chemical biology 9 (6), 1377-1385, 2014 | 59 | 2014 |
| Spherical polar Fourier assembly of protein complexes with arbitrary point group symmetry DW Ritchie, S Grudinin Journal of Applied Crystallography 49 (1), 158-167, 2016 | 54 | 2016 |
| X-ray structure of a CDP-alcohol phosphatidyltransferase membrane enzyme and insights into its catalytic mechanism P Nogly, I Gushchin, A Remeeva, AM Esteves, N Borges, P Ma, ... Nature Communications 5 (1), 4169, 2014 | 50 | 2014 |
| Active state of sensory rhodopsin II: structural determinants for signal transfer and proton pumping I Gushchin, A Reshetnyak, V Borshchevskiy, A Ishchenko, E Round, ... Journal of Molecular Biology 412 (4), 591-600, 2011 | 45 | 2011 |
| Convex-PL: a novel knowledge-based potential for protein-ligand interactions deduced from structural databases using convex optimization M Kadukova, S Grudinin Journal of computer-aided molecular design 31, 943-958, 2017 | 43 | 2017 |
| Dynamical heterogeneity of specific amino acids in bacteriorhodopsin K Wood, S Grudinin, B Kessler, M Weik, M Johnson, GR Kneller, ... Journal of molecular biology 380 (3), 581-591, 2008 | 40 | 2008 |
Maria KadukovaPhD student, Moscow Institute of Physics and Technology; Grenoble Alps UniversityGeverifieerd e-mailadres voor phystech.edu
