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| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 382 | 2021 |
| Vulnerabilities in coronavirus glycan shields despite extensive glycosylation Y Watanabe, ZT Berndsen, J Raghwani, GE Seabright, JD Allen, ... Nature communications 11 (1), 2688, 2020 | 365 | 2020 |
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| Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission J Raghwani, A Rambaut, EC Holmes, VT Hang, TT Hien, J Farrar, B Wills, ... PLoS pathogens 7 (6), e1002064, 2011 | 127 | 2011 |
| Structure of the Lassa virus glycan shield provides a model for immunological resistance Y Watanabe, J Raghwani, JD Allen, GE Seabright, S Li, F Moser, ... Proceedings of the National Academy of Sciences 115 (28), 7320-7325, 2018 | 115 | 2018 |
| Genome-wide evolutionary dynamics of influenza B viruses on a global scale P Langat, J Raghwani, G Dudas, TA Bowden, S Edwards, A Gall, ... PLoS pathogens 13 (12), e1006749, 2017 | 108 | 2017 |
| Phylogeography and epidemic history of hepatitis C virus genotype 4 in Africa JC Iles, J Raghwani, GLA Harrison, J Pepin, CF Djoko, U Tamoufe, ... Virology 464, 233-243, 2014 | 89 | 2014 |
| Context-specific emergence and growth of the SARS-CoV-2 Delta variant JT McCrone, V Hill, S Bajaj, RE Pena, BC Lambert, R Inward, S Bhatt, ... Nature 610 (7930), 154-160, 2022 | 85 | 2022 |
| A molecular-level account of the antigenic hantaviral surface S Li, I Rissanen, A Zeltina, J Hepojoki, J Raghwani, K Harlos, OG Pybus, ... Cell reports 15 (5), 959-967, 2016 | 78 | 2016 |
| Origin and evolution of the unique hepatitis C virus circulating recombinant form 2k/1b J Raghwani, XV Thomas, SM Koekkoek, J Schinkel, R Molenkamp, ... Journal of virology 86 (4), 2212-2220, 2012 | 78 | 2012 |
| The evolution and transmission of epidemic GII. 17 noroviruses J Lu, L Fang, H Zheng, J Lao, F Yang, L Sun, J Xiao, J Lin, T Song, T Ni, ... The Journal of infectious diseases 214 (4), 556-564, 2016 | 69 | 2016 |
| A protective monoclonal antibody targets a site of vulnerability on the surface of Rift Valley fever virus ER Allen, SA Krumm, J Raghwani, S Halldorsson, A Elliott, VA Graham, ... Cell Reports 25 (13), 3750-3758. e4, 2018 | 56 | 2018 |
| Purifying selection determines the short-term time dependency of evolutionary rates in SARS-CoV-2 and pH1N1 influenza M Ghafari, L du Plessis, J Raghwani, S Bhatt, B Xu, OG Pybus, ... Molecular Biology and Evolution 39 (2), msac009, 2022 | 50 | 2022 |
| Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa NR Faria, N Vidal, J Lourenco, J Raghwani, KCE Sigaloff, AJ Tatem, ... PLoS pathogens 15 (12), e1007976, 2019 | 43 | 2019 |
| Effect of live poultry market interventions on influenza A (H7N9) virus, Guangdong, China J Wu, J Lu, NR Faria, X Zeng, Y Song, L Zou, L Yi, L Liang, H Ni, M Kang, ... Emerging Infectious Diseases 22 (12), 2104, 2016 | 38 | 2016 |
| Exceptional heterogeneity in viral evolutionary dynamics characterises chronic hepatitis C virus infection J Raghwani, R Rose, I Sheridan, P Lemey, MA Suchard, T Santantonio, ... PLoS Pathogens 12 (9), e1005894, 2016 | 38 | 2016 |
| Transmission of hepatitis C virus infection among younger and older people who inject drugs in Vancouver, Canada B Jacka, T Applegate, AF Poon, J Raghwani, PR Harrigan, K DeBeck, ... Journal of hepatology 64 (6), 1247-1255, 2016 | 32 | 2016 |
| Molecular evolution, diversity, and adaptation of Influenza A (H7N9) viruses in China J Lu, J Raghwani, R Pryce, TA Bowden, J Thézé, S Huang, Y Song, L Zou, ... Emerging infectious diseases 24 (10), 1795, 2018 | 31 | 2018 |
