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Zhizhuo Zhang
Zhizhuo Zhang
Postdoctoral Research Associate, MIT
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
5895*2015
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1), 84-98, 2012
13252012
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
3962013
Telomerase directly regulates NF-κB-dependent transcription
A Ghosh, G Saginc, SC Leow, E Khattar, EM Shin, TD Yan, M Wong, ...
Nature cell biology 14 (12), 1270-1281, 2012
3722012
3D chromosome modeling with semi-definite programming and Hi-C data
ZZ Zhang, G Li, KC Toh, WK Sung
Journal of computational biology 20 (11), 831-846, 2013
1422013
Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
V Onuchic, E Lurie, I Carrero, P Pawliczek, RY Patel, J Rozowsky, ...
Science 361 (6409), eaar3146, 2018
892018
CENTDIST: discovery of co-associated factors by motif distribution
Z Zhang, CW Chang, WL Goh, WK Sung, E Cheung
Nucleic acids research 39 (suppl_2), W391-W399, 2011
672011
High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies
J Cao, EM Novoa, Z Zhang, WCW Chen, D Liu, GCG Choi, ASL Wong, ...
Nature communications 12 (1), 4138, 2021
592021
The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages
CT Koe, S Li, F Rossi, JJL Wong, Y Wang, Z Zhang, K Chen, SS Aw, ...
Elife 3, e01906, 2014
572014
Inference of spatial organizations of chromosomes using semi-definite embedding approach and Hi-C data
ZZ Zhang, G Li, KC Toh, WK Sung
Research in Computational Molecular Biology: 17th Annual International …, 2013
502013
A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS)
YTTKL Ming-Ru Wu, Lior Nissim, Doron Stupp, Erez Pery, Adina Binder-Nissim ...
Nature Communications 10, 2019
462019
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells
Z Zhang, KR Chng, S Lingadahalli, Z Chen, MH Liu, HH Do, S Cai, ...
Genome research 29 (2), 223-235, 2019
452019
Real-time dynamic single-molecule protein sequencing on an integrated semiconductor device
BD Reed, MJ Meyer, V Abramzon, O Ad, O Ad, P Adcock, FR Ahmad, ...
Science 378 (6616), 186-192, 2022
412022
Genie: a secure, transparent sharing and services platform for genetic and health data
S Zhang, A Kim, D Liu, SC Nuckchady, L Huang, A Masurkar, J Zhang, ...
arXiv preprint arXiv:1811.01431, 2018
222018
Integrative analysis of CRISPR/Cas9 target sites in the human HBB gene
Y Luo, D Zhu, Z Zhang, Y Chen, X Sun
BioMed Research International 2015, 2015
192015
Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm
ZZ Zhang, CW Chang, W Hugo, E Cheung, WK Sung
Journal of Computational Biology 20 (3), 237-248, 2013
132013
A New Nearest Neighbour Searching Algorithm Based on M2M Model.
YP Zhang, ZZ Zhang, Q Chen
IMECS, 31-37, 2007
82007
Ranking potential customers based on group-ensemble
ZZ Zhang, Q Chen, SF Ke, YJ Wu, F Qi, YP Zhang
International Journal of Data Warehousing and Mining (IJDWM) 4 (2), 79-89, 2008
72008
Simultaneously learning DNA motif along with its position and sequence rank preferences through EM algorithm
ZZ Zhang, CW Chang, W Hugo, E Cheung, WK Sung
Research in Computational Molecular Biology: 16th Annual International …, 2012
62012
Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization
D Liu, J Davila-Velderrain, Z Zhang, M Kellis
Nucleic acids research 47 (14), 7235-7246, 2019
52019
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Articles 1–20