Francisco M Couto
Francisco M Couto
LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, Portugal
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Semantic similarity in biomedical ontologies
C Pesquita, D Faria, AO Falcao, P Lord, FM Couto
PLoS comput biol 5 (7), e1000443, 2009
8042009
Metrics for GO based protein semantic similarity: a systematic evaluation
C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto
BMC bioinformatics 9 (5), 1-16, 2008
3472008
Measuring semantic similarity between Gene Ontology terms
FM Couto, MJ Silva, PM Coutinho
Data & knowledge engineering 61 (1), 137-152, 2007
2772007
The agreementmakerlight ontology matching system
D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto
OTM Confederated International Conferences" On the Move to Meaningful …, 2013
2242013
Facts from text—is text mining ready to deliver?
D Rebholz-Schuhmann, H Kirsch, F Couto
PLoS Biol 3 (2), e65, 2005
1892005
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7 (1), 1-17, 2015
1432015
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
FM Couto, MJ Silva, PM Coutinho
Proceedings of the 14th ACM international conference on Information and …, 2005
1382005
Evaluating gobased semantic similarity measures
C Pesquita, D Faria, H Bastos, A Falcão, F Couto
Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007
1272007
Using AgreementMaker to align ontologies for OAEI 2011
IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari
ISWC international workshop on ontology matching (OM) 814, 114-121, 2011
1002011
GOAnnotator: linking protein GO annotations to evidence text
F Couto, M Silva, V Lee, E Dimmer, E Camon, R Apweiler, H Kirsch, ...
Journal of Biomedical Discovery and Collaboration 1 (1), 19, 2006
782006
Finding genomic ontology terms in text using evidence content
F Couto, M Silva, P Coutinho
BMC bioinformatics 6 (Suppl 1), S21, 2005
742005
Disjunctive shared information between ontology concepts: application to Gene Ontology
FM Couto, MJ Silva
Journal of biomedical semantics 2 (1), 1-16, 2011
722011
Ontology alignment repair through modularization and confidence-based heuristics
E Santos, D Faria, C Pesquita, FM Couto
PloS one 10 (12), e0144807, 2015
702015
Implementation of a functional semantic similarity measure between gene-products
FM Couto, MJ Silva, PM Coutinho
Department of Informatics, University of Lisbon, 2003
662003
The semantic web in translational medicine: current applications and future directions
CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto
Briefings in bioinformatics 16 (1), 89-103, 2015
642015
CESSM: collaborative evaluation of semantic similarity measures
C Pesquita, D Pessoa, D Faria, F Couto
JB2009: challenges in bioinformatics 157, 190, 2009
642009
Semantic similarity for automatic classification of chemical compounds
JD Ferreira, FM Couto
PLoS Comput Biol 6 (9), e1000937, 2010
622010
AgreementMakerLight results for OAEI 2013.
D Faria, C Pesquita, E Santos, IF Cruz, FM Couto
OM, 101-108, 2013
612013
Automatic concept recognition using the human phenotype ontology reference and test suite corpora
T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ...
Database 2015, 2015
562015
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments
C Pesquita, D Faria, E Santos, FM Couto
Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume, 2013
562013
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Artikelen 1–20