Derrick Fouts
Derrick Fouts
Professor, Genomic Medicine and Infectious Diseases, J. Craig Venter Institute (JCVI)
Verified email at jcvi.org - Homepage
Title
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Year
Environmental genome shotgun sequencing of the Sargasso Sea
JC Venter, K Remington, JF Heidelberg, AL Halpern, D Rusch, JA Eisen, ...
science 304 (5667), 66-74, 2004
48082004
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
KE Nelson, C Weinel, IT Paulsen, RJ Dodson, H Hilbert, ...
Environmental microbiology 4 (12), 799-808, 2002
14652002
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing …
SR Gill, DE Fouts, GL Archer, EF Mongodin, RT DeBoy, J Ravel, ...
Journal of bacteriology 187 (7), 2426-2438, 2005
12382005
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis
IT Paulsen, L Banerjei, GSA Myers, KE Nelson, R Seshadri, TD Read, ...
Science 299 (5615), 2071-2074, 2003
9722003
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
TD Read, SN Peterson, N Tourasse, LW Baillie, IT Paulsen, KE Nelson, ...
Nature 423 (6935), 81-86, 2003
9182003
Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species
DE Fouts, EF Mongodin, RE Mandrell, WG Miller, DA Rasko, J Ravel, ...
PLoS biology 3 (1), e15, 2005
6172005
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
JF Heidelberg, R Seshadri, SA Haveman, CL Hemme, IT Paulsen, ...
Nature biotechnology 22 (5), 554-559, 2004
5932004
Enteric dysbiosis associated with a mouse model of alcoholic liver disease
AW Yan, D E. Fouts, J Brandl, P Stärkel, M Torralba, E Schott, ...
Hepatology 53 (1), 96-105, 2011
5682011
Whole genome comparisons of serotype 4b and 1/2a strains of the food‐borne pathogen Listeria monocytogenes reveal new insights into the core genome …
KE Nelson, DE Fouts, EF Mongodin, J Ravel, RT DeBoy, JF Kolonay, ...
Nucleic acids research 32 (8), 2386-2395, 2004
5312004
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
R Seshadri, L Adrian, DE Fouts, JA Eisen, AM Phillippy, BA Methe, ...
Science 307 (5706), 105-108, 2005
4952005
Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83
KE Nelson, RD Fleischmann, RT DeBoy, IT Paulsen, DE Fouts, JA Eisen, ...
Journal of bacteriology 185 (18), 5591-5601, 2003
4392003
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)
N Ward, Ø Larsen, J Sakwa, L Bruseth, H Khouri, AS Durkin, G Dimitrov, ...
PLoS biology 2 (10), e303, 2004
3592004
The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1
DA Rasko, J Ravel, OA Økstad, E Helgason, RZ Cer, L Jiang, KA Shores, ...
Nucleic acids research 32 (3), 977-988, 2004
3482004
Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor
DE Fouts, RB Abramovitch, JR Alfano, AM Baldo, CR Buell, S Cartinhour, ...
Proceedings of the National Academy of Sciences 99 (4), 2275-2280, 2002
3382002
Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice
DE Fouts, HL Tyler, RT DeBoy, S Daugherty, Q Ren, JH Badger, ...
PLoS genetics 4 (7), e1000141, 2008
2992008
Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated …
DE Fouts, R Pieper, S Szpakowski, H Pohl, S Knoblach, MJ Suh, ...
Journal of translational medicine 10 (1), 174, 2012
2922012
Pseudomonas syringae Hrp type III secretion system and effector proteins
A Collmer, JL Badel, AO Charkowski, WL Deng, DE Fouts, AR Ramos, ...
Proceedings of the national academy of sciences 97 (16), 8770-8777, 2000
2852000
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes
R Seshadri, GSA Myers, H Tettelin, JA Eisen, JF Heidelberg, RJ Dodson, ...
Proceedings of the National Academy of Sciences 101 (15), 5646-5651, 2004
2772004
Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease
DE Fouts, M Torralba, KE Nelson, DA Brenner, B Schnabl
Journal of hepatology 56 (6), 1283-1292, 2012
2762012
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
DE Fouts
Nucleic acids research 34 (20), 5839-5851, 2006
2582006
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