Avi Flamholz
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eQuilibrator—the biochemical thermodynamics calculator
A Flamholz, E Noor, A Bar-Even, R Milo
Nucleic acids research 40 (D1), D770-D775, 2012
4342012
Glycolytic strategy as a tradeoff between energy yield and protein cost
A Flamholz, E Noor, A Bar-Even, W Liebermeister, R Milo
Proceedings of the National Academy of Sciences 110 (24), 10039-10044, 2013
3872013
Science Forum: SARS-CoV-2 (COVID-19) by the numbers
YM Bar-On, A Flamholz, R Phillips, R Milo
Elife 9, e57309, 2020
3742020
Rethinking glycolysis: on the biochemical logic of metabolic pathways
A Bar-Even, A Flamholz, E Noor, R Milo
Nature Chemical Biology 8 (6), 509-517, 2012
2102012
Pathway thermodynamics highlights kinetic obstacles in central metabolism
E Noor, A Bar-Even, A Flamholz, E Reznik, W Liebermeister, R Milo
PLoS Comput Biol 10 (2), e1003483, 2014
1932014
Visual account of protein investment in cellular functions
W Liebermeister, E Noor, A Flamholz, D Davidi, J Bernhardt, R Milo
Proceedings of the National Academy of Sciences 111 (23), 8488-8493, 2014
1652014
Spanning high-dimensional expression space using ribosome-binding site combinatorics
L Zelcbuch, N Antonovsky, A Bar-Even, A Levin-Karp, U Barenholz, ...
Nucleic acids research 41 (9), e98-e98, 2013
1652013
Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch
BL Oakes, DC Nadler, A Flamholz, C Fellmann, BT Staahl, JA Doudna, ...
Nature biotechnology 34 (6), 646-651, 2016
1472016
Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements
D Davidi, E Noor, W Liebermeister, A Bar-Even, A Flamholz, K Tummler, ...
Proceedings of the National Academy of Sciences 113 (12), 3401-3406, 2016
1422016
An integrated open framework for thermodynamics of reactions that combines accuracy and coverage
E Noor, A Bar-Even, A Flamholz, Y Lubling, D Davidi, R Milo
Bioinformatics 28 (15), 2037-2044, 2012
1192012
Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes
A Bar-Even, E Noor, A Flamholz, R Milo
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1827 (8-9), 1039-1047, 2013
1022013
Thermodynamic constraints shape the structure of carbon fixation pathways
A Bar-Even, A Flamholz, E Noor, R Milo
Biochimica et Biophysica Acta (BBA)-Bioenergetics, 2012
982012
The protein cost of metabolic fluxes: prediction from enzymatic rate laws and cost minimization
E Noor, A Flamholz, A Bar-Even, D Davidi, R Milo, W Liebermeister
PLoS computational biology 12 (11), e1005167, 2016
942016
pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism
NM Mangan, A Flamholz, RD Hood, R Milo, DF Savage
Proceedings of the National Academy of Sciences 113 (36), E5354-E5362, 2016
932016
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
C Huttenhower, AI Flamholz, JN Landis, S Sahi, CL Myers, KL Olszewski, ...
BMC bioinformatics 8 (1), 1-13, 2007
852007
A note on the kinetics of enzyme action: a decomposition that highlights thermodynamic effects
E Noor, A Flamholz, W Liebermeister, A Bar-Even, R Milo
FEBS letters 587 (17), 2772-2777, 2013
772013
Hydrophobicity and charge shape cellular metabolite concentrations
A Bar-Even, E Noor, A Flamholz, JM Buescher, R Milo
PLoS Comput Biol 7 (10), e1002166, 2011
662011
Rapid construction of metabolite biosensors using domain-insertion profiling
DC Nadler, SA Morgan, A Flamholz, KE Kortright, DF Savage
Nature communications 7 (1), 1-11, 2016
612016
The stringent response regulates adaptation to darkness in the cyanobacterium Synechococcus elongatus
RD Hood, SA Higgins, A Flamholz, RJ Nichols, DF Savage
Proceedings of the National Academy of Sciences 113 (33), E4867-E4876, 2016
572016
Revisiting trade-offs between Rubisco kinetic parameters
AI Flamholz, N Prywes, U Moran, D Davidi, YM Bar-On, LM Oltrogge, ...
Biochemistry 58 (31), 3365-3376, 2019
542019
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Artikelen 1–20