| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ... Nucleic acids research 42 (D1), D459-D471, 2014 | 934 | 2014 |
| The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, H Foerster, CA Fulcher, P Kaipa, M Krummenacker, ... Nucleic acids research 36 (suppl_1), D623-D631, 2007 | 722 | 2007 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, R Billington, L Ferrer, H Foerster, CA Fulcher, IM Keseler, ... Nucleic acids research 44 (D1), D471-D480, 2016 | 685 | 2016 |
| EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 637 | 2013 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, T Altman, K Dreher, CA Fulcher, P Subhraveti, IM Keseler, ... Nucleic acids research 40 (D1), D742-D753, 2012 | 632 | 2012 |
| EcoCyc: a comprehensive database of Escherichia coli biology IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... Nucleic acids research 39 (suppl_1), D583-D590, 2010 | 524 | 2010 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, T Altman, JM Dale, K Dreher, CA Fulcher, F Gilham, P Kaipa, ... Nucleic acids research 38 (suppl_1), D473-D479, 2010 | 521 | 2010 |
| Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ... Briefings in bioinformatics 11 (1), 40-79, 2010 | 509 | 2010 |
| The MetaCyc database of metabolic pathways and enzymes R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ... Nucleic acids research 46 (D1), D633-D639, 2018 | 339 | 2018 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 327 | 2017 |
| Multidimensional annotation of the Escherichia coli K-12 genome PD Karp, IM Keseler, A Shearer, M Latendresse, M Krummenacker, ... Nucleic acids research 35 (22), 7577-7590, 2007 | 216 | 2007 |
| Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology PD Karp, M Latendresse, SM Paley, M Krummenacker, QD Ong, ... Briefings in bioinformatics 17 (5), 877-890, 2016 | 210 | 2016 |
| The BioCyc collection of microbial genomes and metabolic pathways PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ... Briefings in bioinformatics 20 (4), 1085-1093, 2019 | 152 | 2019 |
| Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants P Zhang, K Dreher, A Karthikeyan, A Chi, A Pujar, R Caspi, P Karp, ... Plant Physiology 153 (4), 1479-1491, 2010 | 127 | 2010 |
| The pathway tools pathway prediction algorithm PD Karpe, M Latendresse, R Caspi Standards in genomic sciences 5 (3), 424-429, 2011 | 113 | 2011 |
| Behavioral contracts and behavioral subtyping RB Findler, M Latendresse, M Felleisen Proceedings of the 8th European software engineering conference held jointly …, 2001 | 104 | 2001 |
| Construction and completion of flux balance models from pathway databases M Latendresse, M Krummenacker, M Trupp, PD Karp Bioinformatics 28 (3), 388-396, 2012 | 101 | 2012 |
| The ecocyc database PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ... EcoSal Plus 8 (1), 2018 | 78 | 2018 |
| Accurate atom-mapping computation for biochemical reactions M Latendresse, JP Malerich, M Travers, PD Karp Journal of chemical information and modeling 52 (11), 2970-2982, 2012 | 71 | 2012 |
| Masquerade detection via customized grammars M Latendresse International Conference on Detection of Intrusions and Malware, and …, 2005 | 49 | 2005 |
