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Aurélie Kapusta
Aurélie Kapusta
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Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
A Kapusta, Z Kronenberg, VJ Lynch, X Zhuo, LA Ramsay, G Bourque, ...
PLoS genetics 9 (4), e1003470, 2013
6982013
Dynamics of genome size evolution in birds and mammals
A Kapusta, A Suh, C Feschotte
Proceedings of the National Academy of Sciences 114 (8), E1460-E1469, 2017
3602017
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
TA Castoe, APJ de Koning, KT Hall, DC Card, DR Schield, MK Fujita, ...
Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013
3142013
Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
A Kapusta, C Feschotte
Trends in Genetics 30 (10), 439-452, 2014
3092014
Whole genome analysis of a schistosomiasis-transmitting freshwater snail
CM Adema, LDW Hillier, CS Jones, ES Loker, M Knight, P Minx, ...
Nature communications 8 (1), 15451, 2017
2542017
Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
Cell Reports, 2015
2522015
PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia
C Baudry, S Malinsky, M Restituito, A Kapusta, S Rosa, E Meyer, ...
Genes & development 23 (21), 2478-2483, 2009
2162009
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
JF Gout, D Kahn, L Duret, Paramecium Post-Genomics Consortium
PLoS Genetics 6 (5), e1000944, 2010
2062010
Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling
S Flygare, K Simmon, C Miller, Y Qiao, B Kennedy, T Di Sera, EH Graf, ...
Genome biology 17 (1), 1-18, 2016
1762016
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
EP Hamilton, A Kapusta, PE Huvos, SL Bidwell, N Zafar, H Tang, ...
Elife 5, e19090, 2016
1412016
Evolution of bird genomes—a transposon's‐eye view
A Kapusta, A Suh
Annals of the New York Academy of Sciences 1389 (1), 164-185, 2017
1332017
A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements
H Ha, J Song, S Wang, A Kapusta, C Feschotte, KC Chen, J Xing
BMC genomics 15, 1-16, 2014
1252014
Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling
K Bouhouche, JF Gout, A Kapusta, M Bétermier, E Meyer
Nucleic acids research 39 (10), 4249-4264, 2011
1022011
Transposable elements generate regulatory novelty in a tissue-specific fashion
M Trizzino, A Kapusta, CD Brown
BMC genomics 19, 1-12, 2018
1012018
Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon
R Mitra, X Li, A Kapusta, D Mayhew, RD Mitra, C Feschotte, NL Craig
Proceedings of the National Academy of Sciences 110 (1), 234-239, 2013
982013
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 1-9, 2015
942015
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia
O Arnaiz, JF Goût, M Bétermier, K Bouhouche, J Cohen, L Duret, ...
BMC genomics 11 (1), 1-13, 2010
792010
Highly Precise and Developmentally Programmed Genome Assembly in Paramecium Requires Ligase IV–Dependent End Joining
A Kapusta, A Matsuda, A Marmignon, M Ku, A Silve, E Meyer, JD Forney, ...
PLoS genetics 7 (4), e1002049, 2011
712011
Genomics of Ecological Adaptation in Cactophilic Drosophila
Y Guillén, N Rius, A Delprat, A Williford, F Muyas, M Puig, S Casillas, ...
Genome biology and evolution 7 (1), 349-366, 2015
692015
Improved genome assembly and annotation for the rock pigeon (Columba livia)
C Holt, M Campbell, DA Keays, N Edelman, A Kapusta, E Maclary, ...
G3: Genes, Genomes, Genetics 8 (5), 1391-1398, 2018
562018
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