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Mark A Miller
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Creating the CIPRES Science Gateway for inference of large phylogenetic trees
MA Miller, W Pfeiffer, T Schwartz
2010 Gateway Computing Environments Workshop (GCE), 1-8, 2010
125182010
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
SA Lesley, P Kuhn, A Godzik, AM Deacon, I Mathews, A Kreusch, ...
Proceedings of the National Academy of Sciences 99 (18), 11664-11669, 2002
5042002
The CIPRES science gateway: a community resource for phylogenetic analyses
MA Miller, W Pfeiffer, T Schwartz
Proceedings of the 2011 TeraGrid Conference: extreme digital discovery, 1-8, 2011
5022011
A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway
MA Miller, M. A., Schwartz, T., Pickett, B. E., He, S., Klem, E. B ...
Evolutionary Bioinformatics 11, 43-48, 2015
480*2015
The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources
MA Miller, W Pfeiffer, T Schwartz
Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012
3282012
The CIPRES Portals. CIPRES
MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ...
World Wide Web electronic publication, www. phylo. org/sub_sections/portal 8 …, 2009
2352009
Dynamics of alpha-synuclein aggregation and inhibition of pore-like oligomer development by beta-synuclein.
ME Tsigelny IF, Bar-On P, Sharikov Y, Crews L, Hashimoto M, Miller MA ...
FEBS J. 274 (7), 1862, 2007
2122007
A framework for the design and reuse of grid workflows
I Altintas, A Birnbaum, KK Baldridge, W Sudholt, M Miller, C Amoreira, ...
International Workshop on Scientific Applications of Grid Computing, 120-133, 2004
1312004
T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life
I Carbone, JB White, J Miadlikowska, AE Arnold, MA Miller, F Kauff, ...
Bioinformatics 33 (8), 1160-1168, 2017
732017
Mechanism of alpha-synuclein oligomerization and membrane interaction: theoretical approach to unstructured proteins studies.
ME Tsigelny IF, Sharikov Y, Miller MA
Nanomedicine 4 (4), 350-357, 2008
69*2008
T-BAS version 2.1: Tree-Based Alignment Selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees
I Carbone, JB White, J Miadlikowska, AE Arnold, MA Miller, N Magain, ...
Microbiology resource announcements 8 (29), 2019
552019
An All-Atom Model of the Structure of Human Copper Transporter 1
S Tsigelny, I., Sharikov, Y., Greenberg, J., Miller, M., Kouznetsova, V ...
Cell Biochemistry and Biophysics 63 (223-234), 2012
512012
MAPAS: a tool for predicting membrane-contacting protein surfaces.
TIF Sharikov Y, Walker RC, Greenberg J, Kouznetsova V, Nigam SK, Miller MA ...
Nature Methods. 5 (2), 119, 2008
272008
SWAMI: integrating biological databases and analysis tools within user friendly environment
R Rifaieh, R Unwin, J Carver, MA Miller
International Conference on Data Integration in the Life Sciences, 48-58, 2007
242007
Apache airavata sharing service: A tool for enabling user collaboration in science gateways
S Nakandala, S Marru, M Piece, S Pamidighantam, K Yoshimoto, ...
Proceedings of the Practice and Experience in Advanced Research Computing …, 2017
212017
The CIPRES workbench: a flexible framework for creating science gateways
A Miller, M. A., Schwartz, T., Hoover, P., Yoshimoto, K., Sivagnanam, S ...
XSEDE 2015 Conference: Scientific Advancements Enabled by Enhanced …, 2015
182015
Measuring success for a future vision: Defining impact in science gateways/virtual research environments
P Calyam, N Wilkins‐Diehr, M Miller, EH Brookes, R Arora, A Chourasia, ...
Concurrency and Computation: Practice and Experience, 2020
152020
Grid workflow software for a high-throughput proteome annotation pipeline
A Birnbaum, J Hayes, WW Li, MA Miller, PW Arzberger, PE Bourne, ...
International Life Science Grid Workshop, 68-81, 2004
152004
Authoring a science gateway cookbook
S Marru, R Dooley, N Wilkins-Diehr, M Pierce, M Miller, S Pamidighantam, ...
2013 IEEE International Conference on Cluster Computing (CLUSTER), 1-3, 2013
92013
Science Gateway Operational Sustainability: Adopting a Platform-as-a Service Approach
M Pierce, S Marru, MA Miller, A Majumdar, B Demeler
72013
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Articles 1–20