| Energy minimization on manifolds for docking flexible molecules H Mirzaei, S Zarbafian, E Villar, S Mottarella, D Beglov, S Vajda, ... Journal of chemical theory and computation 11 (3), 1063-1076, 2015 | 40 | 2015 |
| Rigid body energy minimization on manifolds for molecular docking H Mirzaei, D Beglov, IC Paschalidis, S Vajda, P Vakili, D Kozakov Journal of chemical theory and computation 8 (11), 4374-4380, 2012 | 37 | 2012 |
| The impact of side-chain packing on protein docking refinement M Moghadasi, H Mirzaei, A Mamonov, P Vakili, S Vajda, IC Paschalidis, ... Journal of chemical information and modeling 55 (4), 872-881, 2015 | 20 | 2015 |
| Protein–ligand docking using FFT based sampling: D3R case study D Padhorny, DR Hall, H Mirzaei, AB Mamonov, M Moghadasi, ... Journal of computer-aided molecular design 32, 225-230, 2018 | 19 | 2018 |
| ILP formulations for variation/defect-tolerant logic mapping on crossbar nano-architectures M Zamani, H Mirzaei, MB Tahoori ACM Journal on Emerging Technologies in Computing Systems (JETC) 9 (3), 1-21, 2013 | 19 | 2013 |
| Focused grid‐based resampling for protein docking and mapping AB Mamonov, M Moghadasi, H Mirzaei, S Zarbafian, LE Grove, ... Journal of computational chemistry 37 (11), 961-970, 2016 | 15 | 2016 |
| A new approach to rigid body minimization with application to molecular docking H Mirzaei, D Kozakov, D Beglov, IC Paschalidis, S Vajda, P Vakili 2012 IEEE 51st IEEE Conference on Decision and Control (CDC), 2983-2988, 2012 | 7 | 2012 |
| Optimization on the space of rigid and flexible motions: an alternative manifold optimization approach P Vakili, H Mirzaei, S Zarbafian, IC Paschalidis, D Kozakov, S Vajda 53rd IEEE Conference on Decision and Control, 5825-5830, 2014 | 2 | 2014 |
| Flexible refinement of protein-ligand docking on manifolds H Mirzaei, E Villar, S Mottarella, D Beglov, IC Paschalidis, S Vajda, ... 52nd IEEE Conference on Decision and Control, 1392-1397, 2013 | 2 | 2013 |
| An Algorithm for Construction of All Perfect Phylogeny Matrices H Mirzaei, H. and Ahmadian, S. and Mahabadi, S. and MATCH 62 (2), 251, 2009 | 1 | 2009 |
| Manifold optimization methods for macromolecular docking H Mirzaei Boston University, 2014 | | 2014 |
| A Polynomial Time Algorithm for a Special Case of Linear Integer Programming G Ghasemiesfeh, H Mirzaei, Y Tabesh arXiv preprint arXiv:1102.1124, 2011 | | 2011 |
| Efficiency and Effectiveness of Content Refinement: An Economic Analysis of Law ES Ghalehei, A Jahanshahi, H Mirzaei | | |
