Thomas Manke
Thomas Manke
Head of Bioinformatics and Deep-Sequencing Unit, Max Planck Institute for Immunobiology and Epigenetics, Freiburg, Germany
Verified email at ie-freiburg.mpg.de
Title
Cited by
Cited by
Year
deepTools2: a next generation web server for deep-sequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ...
Nucleic acids research 44 (W1), W160-W165, 2016
14292016
deepTools: a flexible platform for exploring deep-sequencing data
F Ramírez, F Dündar, S Diehl, BA Grüning, T Manke
Nucleic acids research 42 (W1), W187-W191, 2014
8962014
Light hadron spectroscopy with two flavors of dynamical quarks on the lattice
AA Khan, S Aoki, G Boyd, R Burkhalter, S Ejiri, M Fukugita, S Hashimoto, ...
Physical Review D 65 (5), 054505, 2002
848*2002
Equation of state in finite-temperature QCD with two flavors of improved Wilson quarks
AA Khan, S Aoki, R Burkhalter, S Ejiri, M Fukugita, S Hashimoto, ...
Physical Review D 64 (7), 074510, 2001
299*2001
The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery
HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ...
Cell 167 (5), 1145-1149, 2016
2252016
Predicting transcription factor affinities to DNA from a biophysical model
HG Roider, A Kanhere, T Manke, M Vingron
Bioinformatics 23 (2), 134-141, 2007
2132007
Robustness and network evolution—an entropic principle
L Demetrius, T Manke
Physica A: Statistical Mechanics and its Applications 346 (3-4), 682-696, 2005
2122005
High-resolution TADs reveal DNA sequences underlying genome organization in flies
F Ramírez, V Bhardwaj, L Arrigoni, KC Lam, BA Grüning, J Villaveces, ...
Nature communications 9 (1), 1-15, 2018
1942018
Equation of state for pure SU (3) gauge theory with renormalization group improved action
M Okamoto, AA Khan, S Aoki, R Burkhalter, S Ejiri, M Fukugita, ...
Physical Review D 60 (9), 094510, 1999
1921999
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
T Aktaş, İA Ilık, D Maticzka, V Bhardwaj, CP Rodrigues, G Mittler, T Manke, ...
Nature 544 (7648), 115-119, 2017
1902017
Suv39h-dependent H3K9me3 marks intact retrotransposons and silences LINE elements in mouse embryonic stem cells
A Bulut-Karslioglu, A Inti, F Ramirez, M Barenboim, M Onishi-Seebacher, ...
Molecular cell 55 (2), 277-290, 2014
1762014
A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis
AS Schaefer, GM Richter, M Nothnagel, T Manke, H Dommisch, G Jacobs, ...
Human molecular genetics 19 (3), 553-562, 2010
1612010
Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
M Thomas-Chollier, A Hufton, M Heinig, S O'keeffe, N El Masri, HG Roider, ...
Nature protocols 6 (12), 1860, 2011
1592011
A transcription factor–based mechanism for mouse heterochromatin formation
A Bulut-Karslioglu, V Perrera, M Scaranaro, IA De La Rosa-velazquez, ...
Nature structural & molecular biology 19 (10), 1023, 2012
1522012
PASTAA: identifying transcription factors associated with sets of co-regulated genes
HG Roider, T Manke, S O'Keeffe, M Vingron, SA Haas
Bioinformatics 25 (4), 435-442, 2009
1332009
The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle
HJ Warnatz, D Schmidt, T Manke, I Piccini, M Sultan, T Borodina, ...
Journal of Biological Chemistry 286 (26), 23521-23532, 2011
1302011
Heterochromatin boundaries are hotspots for de novo kinetochore formation
AM Olszak, D Van Essen, AJ Pereira, S Diehl, T Manke, H Maiato, ...
Nature cell biology 13 (7), 799-808, 2011
1172011
Mutational characterization of the bile acid receptor TGR5 in primary sclerosing cholangitis
JR Hov, V Keitel, JK Laerdahl, L Spomer, E Ellinghaus, A ElSharawy, ...
PloS one 5 (8), e12403, 2010
1172010
MicroRNAs differentially expressed in postnatal aortic development downregulate elastin via 3′ UTR and coding-sequence binding sites
CE Ott, J Grünhagen, M Jäger, D Horbelt, S Schwill, K Kallenbach, G Guo, ...
PloS one 6 (1), e16250, 2011
1162011
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development
P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M De Almeida, ...
Immunity 45 (5), 1148-1161, 2016
1072016
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