Simon DW Frost
Simon DW Frost
Microsoft Research
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Cited by
HyPhy: hypothesis testing using phylogenies
SL Pond, SD Frost, SV Muse
Bioinformatics 21, 676-679, 2005
Not so different after all: a comparison of methods for detecting amino acid sites under selection
SLK Pond, SDW Frost
Molecular Biology and Evolution 22 (5), 1208-1222, 2005
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
SLK Pond, SDW Frost
Bioinformatics 21 (10), 2531-2533, 2005
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
W Delport, AFY Poon, SDW Frost, SLK Pond
Bioinformatics 26 (19), 2455-2457, 2010
Automated phylogenetic detection of recombination using a genetic algorithm
SLK Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Molecular biology and evolution 23 (10), 1891-1901, 2006
GARD: a genetic algorithm for recombination detection
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Bioinformatics 22 (24), 3096-3098, 2006
Modeling infectious disease dynamics in the complex landscape of global health
H Heesterbeek, RM Anderson, V Andreasen, S Bansal, D De Angelis, ...
Science 347 (6227), aaa4339, 2015
A random effects branch-site model for detecting episodic diversifying selection
SLK Pond, B Murrell, M Fourment, SDW Frost, W Delport, K Scheffler
Molecular biology and evolution 28 (11), 3033-3043, 2011
Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection
SDW Frost, T Wrin, DM Smith, SLK Pond, Y Liu, E Paxinos, C Chappey, ...
Proceedings of the National Academy of Sciences of the United States of†…, 2005
Evaluation of respondent-driven sampling
N McCreesh, SDW Frost, J Seeley, J Katongole, MN Tarsh, R Ndunguse, ...
Epidemiology 23 (1), 138, 2012
Adaptation to different human populations by HIV-1 revealed by codon-based analyses
SL Kosakovsky Pond, SDW Frost, Z Grossman, MB Gravenor, ...
PLoS Comput Biol 2 (6), e62, 2006
Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection
SJ Little, SDW Frost, JK Wong, DM Smith, SLK Pond, CC Ignacio, ...
Journal of virology 82 (11), 5510-5518, 2008
Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy
HF GŁnthard, SDW Frost, AJ Leigh-Brown, CC Ignacio, K Kee, ...
Journal of virology 73 (11), 9404-9412, 1999
Phylodynamics of infectious disease epidemics
EM Volz, SLK Pond, MJ Ward, AJL Brown, SDW Frost
Genetics 183 (4), 1421-1430, 2009
A genetic algorithm approach to detecting lineage-specific variation in selection pressure
SLK Pond, SDW Frost
Molecular biology and evolution 22 (3), 478-485, 2005
Transmission fitness of drug-resistant human immunodeficiency virus and the prevalence of resistance in the antiretroviral-treated population
AJL Brown, SDW Frost, WC Mathews, K Dawson, NS Hellmann, ES Daar, ...
Journal of Infectious Diseases 187 (4), 683-686, 2003
Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B
SDW Frost, Y Liu, SLK Pond, C Chappey, T Wrin, CJ Petropoulos, ...
Journal of virology 79 (10), 6523-6527, 2005
Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: the relative roles of drift and selection
SDW Frost, M Nijhuis, R Schuurman, CAB Boucher, AJL Brown
Journal of virology 74 (14), 6262-6268, 2000
Individual and Network Factors Associated With Prevalent Hepatitis C Infection Among Rural Appalachian Injection Drug Users
JR Havens, MR Lofwall, SDW Frost, CB Oser, CG Leukefeld, RA Crosby
American Journal of Public Health 103 (1), 44-52, 2013
Respondent-driven sampling of injection drug users in two US–Mexico border cities: Recruitment dynamics and impact on estimates of HIV and syphilis prevalence
SDW Frost, KC Brouwer, MAF Cruz, R Ramos, ME Ramos, RM Lozada, ...
Journal of Urban Health 83 (1), 83-97, 2006
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