Natalie Castellana
Natalie Castellana
CEO, Abterra Biosciences
Verified email at
Cited by
Cited by
Discovery and revision of Arabidopsis genes by proteogenomics
NE Castellana, SH Payne, Z Shen, M Stanke, V Bafna, SP Briggs
Proceedings of the national academy of sciences 105 (52), 21034-21038, 2008
Proteogenomics to discover the full coding content of genomes: a computational perspective
N Castellana, V Bafna
Journal of proteomics 73 (11), 2124-2135, 2010
Proteogenomic database construction driven from large scale RNA-seq data
S Woo, SW Cha, G Merrihew, Y He, N Castellana, C Guest, M MacCoss, ...
Journal of proteome research 13 (1), 21-28, 2014
An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays
NE Castellana, Z Shen, Y He, JW Walley, SP Briggs, V Bafna
Molecular & Cellular Proteomics 13 (1), 157-167, 2014
Template proteogenomics: sequencing whole proteins using an imperfect database
NE Castellana, V Pham, D Arnott, JR Lill, V Bafna
Molecular & Cellular Proteomics 9 (6), 1260-1270, 2010
Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti‐lymphotoxin‐α antibody
NE Castellana, K McCutcheon, VC Pham, K Harden, A Nguyen, J Young, ...
Proteomics 11 (3), 395-405, 2011
INDI—integrated nanobody database for immunoinformatics
P Deszyński, J Młokosiewicz, A Volanakis, I Jaszczyszyn, N Castellana, ...
Nucleic Acids Research 50 (D1), D1273-D1281, 2022
Plant proteogenomics: from protein extraction to improved gene predictions
B Chapman, N Castellana, A Apffel, R Ghan, GR Cramer, M Bellgard, ...
Proteomics for Biomarker Discovery, 267-294, 2013
Serum Proteomics Expands on Identifying More High-Affinity Antibodies in Immunized Rabbits Than Deep B-Cell Repertoire Sequencing Alone
SR Bonissone, T Lima, K Harris, L Davison, B Avanzino, N Trinklein, ...
BioRxiv, 833871, 2019
MORPH-PRO: a novel algorithm and web server for protein morphing
NE Castellana, A Lushnikov, P Rotkiewicz, N Sefcovic, PA Pevzner, ...
Algorithms for Molecular Biology 8, 1-9, 2013
Proteo-genomic analysis identifies two major sites of vulnerability on Ebolavirus glycoprotein for neutralizing antibodies in convalescent human plasma
P Gilchuk, A Guthals, SR Bonissone, K Huang, BM Gunn, G Alter, ...
Frontiers in immunology 12, 706757, 2021
Systematic analysis of human antibody response to ebolavirus glycoprotein shows high prevalence of neutralizing public clonotypes
EC Chen, P Gilchuk, SJ Zost, PA Ilinykh, E Binshtein, K Huang, L Myers, ...
Cell reports 42 (4), 2023
Systematic analysis of human antibody response to ebolavirus glycoprotein reveals high prevalence of neutralizing public clonotypes
EC Chen, P Gilchuk, SJ Zost, PA Ilinykh, E Binshtein, K Huang, L Myers, ...
bioRxiv, 2022.01. 12.476089, 2022
Relaxing haplotype block models for association testing
N Castellana, K Dhamdhere, S Sridhar, R Schwartz
Biocomputing 2006, 454-466, 2006
De novo sequencing and construction of a unique antibody for the recognition of alternative conformations of cytochrome c in cells
F Tomasina, J Martínez, A Zeida, ML Chiribao, V Demicheli, A Correa, ...
Proceedings of the National Academy of Sciences 119 (47), e2213432119, 2022
Proteogenomics: Applications of mass spectrometry at the interface of genomics and proteomics
N Castellana
University of California, San Diego, 2012
Method for antibody identification from protein mixtures
N Castellana, S Bonissone, A Patel
US Patent App. 18/481,945, 2024
Temporal dynamics of the serological compartment of rabbit antibody repertoires
A Patel, SR Bonissone, N Castellana
The Journal of Immunology 202 (1_Supplement), 123.16-123.16, 2019
Proteomic analysis of the serum antibody repertoire: a glimpse of the hidden repertoire.
S Bonissone, A Patel, T Lima, N Castellana
Resurrecting an antibody against an alternative conformation of cytochrome c: the recombinant mAb 1D3
R Radi, F Tomasina, L Piacenza, N Castellana, M Goff, T Cooper, ...
Free Radical Biology and Medicine 128, S91, 2018
The system can't perform the operation now. Try again later.
Articles 1–20