Susan Bassham
Susan Bassham
University of Oregon, Institute of Ecology and Evolution
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Stacks: an analysis tool set for population genomics
J Catchen, PA Hohenlohe, S Bassham, A Amores, WA Cresko
Molecular ecology 22 (11), 3124-3140, 2013
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
PA Hohenlohe, S Bassham, PD Etter, N Stiffler, EA Johnson, WA Cresko
PLoS genet 6 (2), e1000862, 2010
SNP discovery and genotyping for evolutionary genetics using RAD sequencing
PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko
Molecular methods for evolutionary genetics, 157-178, 2012
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
PA Hohenlohe, S Bassham, M Currey, WA Cresko
Philosophical Transactions of the Royal Society B: Biological Sciences 367 …, 2012
Local de novo assembly of RAD paired-end contigs using short sequencing reads
PD Etter, JL Preston, S Bassham, WA Cresko, EA Johnson
PloS one 6 (4), e18561, 2011
The population structure and recent colonization history of O regon threespine stickleback determined using restriction‐site associated DNA‐sequencing
J Catchen, S Bassham, T Wilson, M Currey, C O'Brien, Q Yeates, ...
Molecular ecology 22 (11), 2864-2883, 2013
Evolution of stickleback in 50 years on earthquake-uplifted islands
EA Lescak, SL Bassham, J Catchen, O Gelmond, ML Sherbick, ...
Proceedings of the National Academy of Sciences 112 (52), E7204-E7212, 2015
The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica
S Bassham, JH Postlethwait
Development 132 (19), 4259-4272, 2005
Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
C Canestro, S Bassham, J Postlethwait
Developmental biology 285 (2), 298-315, 2005
Brachyury (T) expression in embryos of a larvacean urochordate, Oikopleura dioica, and the ancestral role of T
S Bassham, J Postlethwait
Developmental biology 220 (2), 322-332, 2000
Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes
FW Allendorf, S Bassham, WA Cresko, MT Limborg, LW Seeb, JE Seeb
Journal of Heredity 106 (3), 217-227, 2015
Seeing chordate evolution through the Cionagenome sequence
C Caņestro, S Bassham, JH Postlethwait
Genome biology 4 (3), 208, 2003
The genome of the Gulf pipefish enables understanding of evolutionary innovations
CM Small, S Bassham, J Catchen, A Amores, AM Fuiten, RS Brown, ...
Genome biology 17 (1), 258, 2016
Repeated selection of alternatively adapted haplotypes creates sweeping genomic remodeling in stickleback
S Bassham, J Catchen, E Lescak, FA von Hippel, WA Cresko
Genetics 209 (3), 921-939, 2018
Evolution of developmental roles of Pax2/5/8paralogs after independent duplication in urochordate and vertebrate lineages
S Bassham, C Caņestro, JH Postlethwait
BMC biology 6 (1), 35, 2008
Evolution of the thyroid: Anterior–posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
C Caņestro, S Bassham, JH Postlethwait
Developmental dynamics: an official publication of the American Association …, 2008
Host genotype and microbiota contribute asymmetrically to transcriptional variation in the threespine stickleback gut
CM Small, K Milligan-Myhre, S Bassham, K Guillemin, WA Cresko
Genome biology and evolution 9 (3), 504-520, 2017
Molecular methods for evolutionary genetics
PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko
Methods in Molecular Biology 772, 1-19, 2011
Remembering James Alan Bassham (1922–2012)
H Bassham, S Bassham
Photosynthesis research 128 (1), 3-13, 2016
Developmental timing differences underlie armor loss across threespine stickleback populations
MC Currey, S Bassham, S Perry, WA Cresko
Evolution & Development 19 (6), 231-243, 2017
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