| Stacks: an analysis tool set for population genomics J Catchen, PA Hohenlohe, S Bassham, A Amores, WA Cresko Molecular ecology 22 (11), 3124-3140, 2013 | 3715 | 2013 |
| Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags PA Hohenlohe, S Bassham, PD Etter, N Stiffler, EA Johnson, WA Cresko PLoS genetics 6 (2), e1000862, 2010 | 1642 | 2010 |
| SNP discovery and genotyping for evolutionary genetics using RAD sequencing PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko Molecular methods for evolutionary genetics, 157-178, 2011 | 452 | 2011 |
| Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes PA Hohenlohe, S Bassham, M Currey, WA Cresko Philosophical Transactions of the Royal Society B: Biological Sciences 367 …, 2012 | 250 | 2012 |
| Local de novo assembly of RAD paired-end contigs using short sequencing reads PD Etter, JL Preston, S Bassham, WA Cresko, EA Johnson PloS one 6 (4), e18561, 2011 | 229 | 2011 |
| Evolution of stickleback in 50 years on earthquake-uplifted islands EA Lescak, SL Bassham, J Catchen, O Gelmond, ML Sherbick, ... Proceedings of the National Academy of Sciences 112 (52), E7204-E7212, 2015 | 184 | 2015 |
| The population structure and recent colonization history of O regon threespine stickleback determined using restriction‐site associated DNA‐sequencing J Catchen, S Bassham, T Wilson, M Currey, C O'Brien, Q Yeates, ... Molecular ecology 22 (11), 2864-2883, 2013 | 173 | 2013 |
| Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes FW Allendorf, S Bassham, WA Cresko, MT Limborg, LW Seeb, JE Seeb Journal of Heredity 106 (3), 217-227, 2015 | 106 | 2015 |
| The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica S Bassham, JH Postlethwait Oxford University Press for The Company of Biologists Limited 132 (19), 4259 …, 2005 | 99 | 2005 |
| Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain C Cañestro, S Bassham, J Postlethwait Developmental biology 285 (2), 298-315, 2005 | 93 | 2005 |
| The genome of the Gulf pipefish enables understanding of evolutionary innovations CM Small, S Bassham, J Catchen, A Amores, AM Fuiten, RS Brown, ... Genome biology 17, 1-23, 2016 | 79 | 2016 |
| Brachyury (T) expression in embryos of a larvacean urochordate, Oikopleura dioica, and the ancestral role of T S Bassham, J Postlethwait Developmental biology 220 (2), 322-332, 2000 | 75 | 2000 |
| Repeated selection of alternatively adapted haplotypes creates sweeping genomic remodeling in stickleback S Bassham, J Catchen, E Lescak, FA von Hippel, WA Cresko Genetics 209 (3), 921-939, 2018 | 63 | 2018 |
| Seeing chordate evolution through the Cionagenome sequence C Cañestro, S Bassham, JH Postlethwait Genome biology 4, 1-5, 2003 | 52 | 2003 |
| Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny J Catchen, A Amores, S Bassham G3: Genes, Genomes, Genetics 10 (11), 4115-4128, 2020 | 50 | 2020 |
| Molecular methods for evolutionary genetics PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko, ... Methods in Molecular Biology 772, 1-19, 2011 | 43 | 2011 |
| Evolution of developmental roles of Pax2/5/8paralogs after independent duplication in urochordate and vertebrate lineages S Bassham, C Cañestro, JH Postlethwait BMC biology 6, 1-17, 2008 | 42 | 2008 |
| Host genotype and microbiota contribute asymmetrically to transcriptional variation in the threespine stickleback gut CM Small, K Milligan-Myhre, S Bassham, K Guillemin, WA Cresko Genome biology and evolution 9 (3), 504-520, 2017 | 41 | 2017 |
| Evolution of the thyroid: Anterior–posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression C Cañestro, S Bassham, JH Postlethwait Developmental dynamics: an official publication of the American Association …, 2008 | 34 | 2008 |
| Genome‐wide single nucleotide polymorphism markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species K Rengefors, R Gollnisch, I Sassenhagen, K Härnström Aloisi, ... Molecular Ecology 30 (4), 912-925, 2021 | 12 | 2021 |
