Gregory Smith
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Single-cell transcriptional profiles in human skeletal muscle
AB Rubenstein, GR Smith, U Raue, G Begue, K Minchev, F Ruf-Zamojski, ...
Scientific reports 10 (1), 1-15, 2020
Molecular transducers of physical activity consortium (MoTrPAC): mapping the dynamic responses to exercise
JA Sanford, CD Nogiec, ME Lindholm, JN Adkins, D Amar, S Dasari, ...
Cell 181 (7), 1464-1474, 2020
Drug response consistency in CCLE and CGP
M Bouhaddou, MS DiStefano, EA Riesel, E Carrasco, HY Holzapfel, ...
Nature 540 (7631), E9-E10, 2016
Innate immune response to influenza virus at single-cell resolution in human epithelial cells revealed paracrine induction of interferon lambda 1
I Ramos, G Smith, F Ruf-Zamojski, C Martínez-Romero, M Fribourg, ...
Journal of virology 93 (20), e00559-19, 2019
Surveying capsid assembly pathways through simulation-based data fitting
L Xie, GR Smith, X Feng, R Schwartz
Biophysical journal 103 (7), 1545-1554, 2012
Applying Molecular Crowding Models to Simulations of Virus Capsid Assembly In Vitro
GR Smith, L Xie, B Lee, R Schwartz
Biophysical journal 106 (1), 310-320, 2014
Heterogeneous origins and functions of mouse skeletal muscle-resident macrophages
X Wang, AA Sathe, GR Smith, F Ruf-Zamojski, V Nair, KJ Lavine, C Xing, ...
Proceedings of the National Academy of Sciences 117 (34), 20729-20740, 2020
Single-cell stabilization method identifies gonadotrope transcriptional dynamics and pituitary cell type heterogeneity
F Ruf-Zamojski, Y Ge, V Nair, M Zamojski, H Pincas, C Toufaily, ...
Nucleic Acids Research, 2018
Single nucleus multi-omics regulatory landscape of the murine pituitary
F Ruf-Zamojski, Z Zhang, M Zamojski, GR Smith, N Mendelev, H Liu, ...
Nature communications 12 (1), 1-20, 2021
Attenuated activation of pulmonary immune cells in mRNA-1273–vaccinated hamsters after SARS-CoV-2 infection
M Meyer, Y Wang, D Edwards, GR Smith, AB Rubenstein, P Ramanathan, ...
The Journal of clinical investigation 131 (20), 2021
mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge
M Meyer, Y Wang, D Edwards, GR Smith, AB Rubenstein, P Ramanathan, ...
bioRxiv, 2021
A mechanistic beta-binomial probability model for mRNA sequencing data
GR Smith, MR Birtwistle
PLoS One 11 (6), e0157828, 2016
Modeling effects of RNA on capsid assembly pathways via coarse-grained stochastic simulation
GR Smith, L Xie, R Schwartz
PloS one 11 (5), e0156547, 2016
Antibody Responses to SARS-CoV-2 Following an Outbreak Among Marine Recruits With Asymptomatic or Mild Infection
I Ramos, C Goforth, A Soares-Schanoski, DL Weir, EC Samuels, S Phogat, ...
Frontiers in immunology, 2154, 2021
Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle
VD Nair, M Vasoya, V Nair, GR Smith, H Pincas, Y Ge, CM Douglas, ...
Genomics 113 (6), 3827-3841, 2021
Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms
Z Zhang, M Zamojski, GR Smith, TL Willis, V Yianni, N Mendelev, ...
Cell reports 38 (10), 110467, 2022
Network Inference from Perturbation Time Course Data
D Sarmah, GR Smith, M Bouhaddou, AD Stern, J Erskine, MR Birtwistle
bioRxiv, 341008, 2022
Single nucleus multi-omics regulatory atlas of the murine pituitary
F Ruf-Zamojski, Z Zhang, M Zamojski, GR Smith, N Mendelev, H Liu, ...
bioRxiv, 2020
Derivative-free optimization of rate parameters of capsid assembly models from bulk in vitro data
L Xie, GR Smith, R Schwartz
IEEE/ACM transactions on computational biology and bioinformatics 14 (4 …, 2016
Applying derivative-free optimization to fit kinetic parameters of viral capsid self-assembly models from multi-source bulk in vitro data
L Xie, G Smith, R Schwartz
Biophysical Journal 108 (2), 470a-471a, 2015
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Articles 1–20