David Studholme
David Studholme
Verified email at exeter.ac.uk
Cited by
Cited by
The Pfam protein families database
A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ...
Nucleic acids research 32 (suppl_1), D138-D141, 2004
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
BJ Haas, S Kamoun, MC Zody, RHY Jiang, RE Handsaker, LM Cano, ...
Nature 461 (7262), 393-398, 2009
InterPro, progress and status in 2005
NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, ...
Nucleic acids research 33 (suppl_1), D201-D205, 2005
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
A Molnár, F Schwach, DJ Studholme, EC Thuenemann, DC Baulcombe
Nature 447 (7148), 1126-1129, 2007
The bacterial enhancer-dependent ς54 (ςN) transcription factor
M Buck, MT Gallegos, DJ Studholme, Y Guo, JD Gralla
Journal of bacteriology 182 (15), 4129-4136, 2000
Application of'next-generation'sequencing technologies to microbial genetics
D MacLean, JDG Jones, DJ Studholme
Nature Reviews Microbiology 7 (4), 96-97, 2009
Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome
L Baxter, S Tripathy, N Ishaque, N Boot, A Cabral, E Kemen, M Thines, ...
science 330 (6010), 1549-1551, 2010
Database issue
A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, ...
Nucleic Acids Res 32, D138-D141, 2004
Genome evolution following host jumps in the Irish potato famine pathogen lineage
S Raffaele, RA Farrer, LM Cano, DJ Studholme, D MacLean, M Thines, ...
Science 330 (6010), 1540-1543, 2010
Assessing the performance of the oxford nanopore technologies minion
T Laver, J Harrison, PA O’neill, K Moore, A Farbos, K Paszkiewicz, ...
Biomolecular detection and quantification 3, 1-8, 2015
Domain architectures of σ54-dependent transcriptional activators
DJ Studholme, R Dixon
Journal of bacteriology 185 (6), 1757-1767, 2003
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
RA Mosher, CW Melnyk, KA Kelly, RM Dunn, DJ Studholme, ...
Nature 460 (7252), 283-286, 2009
A toolkit for analysing large-scale plant small RNA datasets
S Moxon, F Schwach, T Dalmay, D MacLean, DJ Studholme, V Moulton
Bioinformatics 24 (19), 2252-2253, 2008
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
RA Mosher, F Schwach, D Studholme, DC Baulcombe
Proceedings of the National Academy of Sciences 105 (8), 3145-3150, 2008
Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana
E Kemen, A Gardiner, T Schultz-Larsen, AC Kemen, AL Balmuth, ...
PLoS Biol 9 (7), e1001094, 2011
Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes
JC Setubal, P Dos Santos, BS Goldman, H Ertesvåg, G Espin, LM Rubio, ...
Journal of bacteriology 191 (14), 4534-4545, 2009
De novo assembly of short sequence reads
K Paszkiewicz, DJ Studholme
Briefings in bioinformatics 11 (5), 457-472, 2010
The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity
R Cai, J Lewis, S Yan, H Liu, CR Clarke, F Campanile, NF Almeida, ...
PLoS Pathog 7 (8), e1002130, 2011
Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants
R Maor, A Jones, TS Nühse, DJ Studholme, SC Peck, K Shirasu
Molecular & cellular proteomics 6 (4), 601-610, 2007
Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity
G Fabro, J Steinbrenner, M Coates, N Ishaque, L Baxter, DJ Studholme, ...
PLoS pathog 7 (11), e1002348, 2011
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