Ruth Isserlin
Ruth Isserlin
Donnelly Centre, University of Toronto
Geverifieerd e-mailadres voor utoronto.ca
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Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366, 2007
22122007
A draft map of the human proteome
MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ...
Nature 509 (7502), 575-581, 2014
17482014
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation
D Merico, R Isserlin, O Stueker, A Emili, GD Bader
PloS one 5 (11), e13984, 2010
12882010
The biomolecular interaction network database and related tools 2005 update
C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, ...
Nucleic acids research 33 (suppl_1), D418-D424, 2005
7002005
Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma
H Witt, SC Mack, M Ryzhova, S Bender, M Sill, R Isserlin, A Benner, ...
Cancer cell 20 (2), 143-157, 2011
3962011
Too many roads not taken
AM Edwards, R Isserlin, GD Bader, SV Frye, TM Willson, HY Frank
Nature 470 (7333), 163-165, 2011
3122011
A call for systematic research on solute carriers
A CÚsar-Razquin, B Snijder, T Frappier-Brinton, R Isserlin, G Gyimesi, ...
Cell 162 (3), 478-487, 2015
3032015
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
B Aranda, H Blankenburg, S Kerrien, FSL Brinkman, A Ceol, E Chautard, ...
Nature methods 8 (7), 528-529, 2011
2652011
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap
J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ...
Nature protocols 14 (2), 482-517, 2019
2382019
miR-126 regulates distinct self-renewal outcomes in normal and malignant hematopoietic stem cells
ER Lechman, B Gentner, SWK Ng, EM Schoof, P van Galen, JA Kennedy, ...
Cancer cell 29 (2), 214-228, 2016
1682016
Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses
AO Gramolini, T Kislinger, R Alikhani-Koopaei, V Fong, NJ Thompson, ...
Molecular & Cellular Proteomics 7 (3), 519-533, 2008
1202008
A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency
AB Mak, Z Ni, JA Hewel, GI Chen, G Zhong, K Karamboulas, K Blakely, ...
Molecular & Cellular Proteomics 9 (5), 811-823, 2010
1052010
The biomolecular interaction network database in PSI-MI 2.5
R Isserlin, RA El-Badrawi, GD Bader
Database 2011, 2011
1002011
AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations
M Kucera, R Isserlin, A Arkhangorodsky, GD Bader
F1000Research 5, 2016
882016
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
L Oesper, D Merico, R Isserlin, GD Bader
Source code for biology and medicine 6 (1), 7, 2011
832011
Enrichment Map–a Cytoscape app to visualize and explore OMICs pathway enrichment results
R Isserlin, D Merico, V Voisin, GD Bader
F1000Research 3, 2014
792014
Single-cell transcriptomic profiling of the aging mouse brain
M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ...
Nature neuroscience 22 (10), 1696-1708, 2019
732019
SeqHound: biological sequence and structure database as a platform for bioinformatics research
K Michalickova, GD Bader, M Dumontier, H Lieu, D Betel, R Isserlin, ...
BMC bioinformatics 3 (1), 32, 2002
702002
Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map
D Merico, R Isserlin, GD Bader
Network Biology, 257-277, 2011
672011
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps
R Isserlin, D Merico, R Alikhani‐Koupaei, A Gramolini, GD Bader, A Emili
Proteomics 10 (6), 1316-1327, 2010
632010
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Artikelen 1–20