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William "Bill" Andreopoulos
William "Bill" Andreopoulos
Assistant Professor, Computer Science, San Jose State University
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Data classification
CC Aggarwal, CC Aggarwal
Data Mining: The Textbook, 285-344, 2015
33712015
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 5125, 2020
3562020
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
3392009
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
3242017
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature ecology & evolution 3 (4), 668-678, 2019
2682019
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 96 (1), 141-153, 2020
2092020
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
1892020
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS computational biology 4 (7), e1000108, 2008
1862008
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature Microbiology 3 (12), 1417-1428, 2018
1252018
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
1092016
Genetic determinants of endophytism in the Arabidopsis root mycobiome
F Mesny, S Miyauchi, T Thiergart, B Pickel, L Atanasova, M Karlsson, ...
Nature communications 12 (1), 7227, 2021
1002021
Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity
FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ...
Molecular biology and evolution 38 (4), 1428-1446, 2021
932021
Convolutional neural networks and extreme learning machines for malware classification
M Jain, W Andreopoulos, M Stamp
Journal of Computer Virology and Hacking Techniques 16, 229-244, 2020
712020
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
LA Lofgren, NH Nguyen, R Vilgalys, J Ruytinx, HL Liao, S Branco, A Kuo, ...
New Phytologist 230 (2), 774-792, 2021
602021
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
H Park, B Min, Y Jang, J Kim, A Lipzen, A Sharma, B Andreopoulos, ...
Applied microbiology and biotechnology 103, 8145-8155, 2019
562019
The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins
AM Geller, I Pollin, D Zlotkin, A Danov, N Nachmias, WB Andreopoulos, ...
Nature communications 12 (1), 3743, 2021
522021
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10, 1-15, 2009
522009
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
462007
Diploid-dominant life cycles characterize the early evolution of Fungi
KR Amses, DR Simmons, JE Longcore, SJ Mondo, K Seto, GH Jerônimo, ...
Proceedings of the National Academy of Sciences 119 (36), e2116841119, 2022
432022
Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes
WB Andreopoulos, AM Geller, M Lucke, J Balewski, A Clum, NN Ivanova, ...
Nucleic acids research 50 (3), e17-e17, 2022
392022
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