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Siavash Raeisi Dehkordi
Siavash Raeisi Dehkordi
PhD student at UC San Diego
Geverifieerd e-mailadres voor ucsd.edu
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ecDNA hubs drive cooperative intermolecular oncogene expression
KL Hung, KE Yost, L Xie, Q Shi, K Helmsauer, J Luebeck, R Schöpflin, ...
Nature 600 (7890), 731-736, 2021
1472021
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications
J Luebeck, C Coruh, SR Dehkordi, JT Lange, KM Turner, V Deshpande, ...
Nature communications 11 (1), 4374, 2020
632020
Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH
KL Hung, J Luebeck, SR Dehkordi, CI Colón, R Li, ITL Wong, C Coruh, ...
Nature genetics 54 (11), 1746-1754, 2022
512022
Plasticity of Extrachromosomal and Intrachromosomal BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges
K Song, JK Minami, A Huang, SR Dehkordi, SH Lomeli, J Luebeck, ...
Cancer discovery 12 (4), 1046-1069, 2022
392022
Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19
NS Sahajpal, CYJ Lai, A Hastie, AK Mondal, SR Dehkordi, ...
Iscience 25 (2), 2022
18*2022
FaNDOM: Fast nested distance-based seeding of optical maps
SR Dehkordi, J Luebeck, V Bafna
Patterns 2 (5), 2021
152021
The landscape of extrachromosomal circular DNA in medulloblastoma
OS Chapman, J Luebeck, S Wani, A Tiwari, M Pagadala, S Wang, ...
bioRxiv, 2021.10. 18.464907, 2021
102021
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma
OS Chapman, J Luebeck, S Sridhar, ITL Wong, D Dixit, S Wang, G Prasad, ...
Nature genetics 55 (12), 2189-2199, 2023
42023
Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change
SR Dehkordi, ITL Wong, J Ni, J Luebeck, K Zhu, G Prasad, ...
bioRxiv, 2023
2023
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