Neha J Varghese
Neha J Varghese
DOE Joint Genome Institute
Geverifieerd e-mailadres voor lbl.gov
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IMG 4 version of the integrated microbial genomes comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ...
Nucleic acids research 42 (D1), D560-D567, 2014
5442014
Microbial species delineation using whole genome sequences
NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ...
Nucleic acids research 43 (14), 6761-6771, 2015
4592015
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ...
Nucleic acids research 47 (D1), D666-D677, 2019
3892019
Protein structure determination using metagenome sequence data
S Ovchinnikov, H Park, N Varghese, PS Huang, GA Pavlopoulos, DE Kim, ...
Science 355 (6322), 294-298, 2017
3492017
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu, K Palaniappan, E Szeto, M Pillay, ...
Nucleic acids research, gkw929, 2016
3452016
IMG/M 4 version of the integrated metagenome comparative analysis system
VM Markowitz, IMA Chen, K Chu, E Szeto, K Palaniappan, M Pillay, ...
Nucleic acids research 42 (D1), D568-D573, 2014
2722014
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
1782018
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676-683, 2017
1712017
Genome data provides high support for generic boundaries in Burkholderia sensu lato
CW Beukes, M Palmer, P Manyaka, WY Chan, JR Avontuur, E van Zyl, ...
Frontiers in microbiology 8, 1154, 2017
652017
Genome‐based evolutionary history of Pseudomonas spp
C Hesse, F Schulz, CT Bull, BT Shaffer, Q Yan, N Shapiro, KA Hassan, ...
Environmental microbiology 20 (6), 2142-2159, 2018
642018
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology, 1-11, 2020
352020
Permanent draft genome of Thiobacillus thioparus DSM 505 T, an obligately chemolithoautotrophic member of the Betaproteobacteria
LP Hutt, M Huntemann, A Clum, M Pillay, K Palaniappan, N Varghese, ...
Standards in genomic sciences 12 (1), 1-8, 2017
282017
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus
IK Jordan, AB Conley, IV Antonov, RA Arthur, ED Cook, GP Cooper, ...
Journal of bacteriology 193 (20), 5879-5880, 2011
282011
GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease
DH Haft, N Varghese
PloS one 6 (12), e28886, 2011
232011
Absence of genome reduction in diverse, facultative endohyphal bacteria
DA Baltrus, K Dougherty, KR Arendt, M Huntemann, A Clum, M Pillay, ...
Microbial genomics 3 (2), 2017
212017
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil
MC Rice, JM Norton, F Valois, A Bollmann, PJ Bottomley, MG Klotz, ...
Standards in genomic sciences 11 (1), 1-8, 2016
192016
Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain …
KM Scott, J Williams, CMB Porter, S Russel, TL Harmer, JH Paul, ...
Environmental microbiology 20 (8), 2686-2708, 2018
132018
Permanent draft genome of Thermithiobacillus tepidarius DSM 3134 T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia
R Boden, LP Hutt, M Huntemann, A Clum, M Pillay, K Palaniappan, ...
Standards in genomic sciences 11 (1), 1-8, 2016
122016
Relating the disease mutation spectrum to the evolution of the cystic fibrosis transmembrane conductance regulator (CFTR)
L Rishishwar, N Varghese, E Tyagi, SC Harvey, IK Jordan, NA McCarty
PloS one 7 (8), e42336, 2012
112012
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
B Nowinski, CB Smith, CM Thomas, K Esson, R Marin, CM Preston, ...
Scientific data 6 (1), 1-7, 2019
102019
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