Rasmus Hansen Kirkegaard
Rasmus Hansen Kirkegaard
Postdoc at Joint Microbiome Facility of the MedUni of Vienna and the University of Vienna
Verified email at univie.ac.at
Title
Cited by
Cited by
Year
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504-509, 2015
12552015
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
PHN Mads Albertsen , Søren M. Karst , Anja S. Ziegler , Rasmus H. Kirkegaard
PLoS ONE 10 (7), e0132783, 2015
3562015
Experimental methods in wastewater treatment
M Albertsen, RH Kirkegaard, MS Dueholm, PHÊ Nielsen
Experimental Methods in Wastewater Treatment, 2016
194*2016
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data
KSS Andersen, RH Kirkegaard, SM Karst, M Albertsen
bioRxiv, 299537, 2018
1242018
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups
SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ...
Database 2017, 2017
1132017
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ...
Nature biotechnology, 2018
1122018
The impact of immigration on microbial community composition in full-scale anaerobic digesters
RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ...
Scientific Reports 7 (1), 9343, 2017
103*2017
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge
SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ...
Frontiers in Microbiology 8, 1134, 2017
942017
Cultivation and genomic analysis of “Candidatus Nitrosocaldus islandicus”, an obligately thermophilic, ammonia-oxidizing thaumarchaeon from a hot spring biofilm in Graendalur …
A Daebeler, C Herbold, J Vierheilig, CJ Sedlacek, P Pjevac, M Albertsen, ...
Frontiers in Microbiology 9, 193, 2018
612018
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ...
Nature Methods 18 (2), 165-169, 2021
53*2021
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions
Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ...
Scientific reports 6 (1), 1-15, 2016
512016
mmgenome: a toolbox for reproducible genome extraction from metagenomes
SM Karst, RH Kirkegaard, M Albertsen
bioRxiv, 059121, 2016
482016
Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria
K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ...
MBio 9 (4), e01186-18, 2018
462018
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge
SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ...
The ISME journal 10 (9), 2223-2234, 2016
412016
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters
RH Kirkegaard, MS Dueholm, SJ McIlroy, M Nierychlo, SM Karst, ...
The ISME journal 10 (10), 2352-2364, 2016
372016
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
CM Singleton, F Petriglieri, JM Kristensen, RH Kirkegaard, TY Michaelsen, ...
Nature Communications 12 (1), 1-13, 2021
28*2021
Novel prosthecate bacteria from the candidate phylum Acetothermia
L Hao, SJ McIlroy, RH Kirkegaard, SM Karst, WEY Fernando, H Aslan, ...
The ISME journal 12 (9), 2225-2237, 2018
222018
Genomic and in situ analyses reveal the Micropruina spp. as abundant fermentative glycogen accumulating organisms in enhanced biological phosphorus removal systems
SJ McIlroy, CA Onetto, B McIlroy, FA Herbst, MS Dueholm, RH Kirkegaard, ...
Frontiers in microbiology 9, 1004, 2018
192018
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics
L Hao, TY Michaelsen, CM Singleton, G Dottorini, RH Kirkegaard, ...
The ISME Journal 14 (4), 906-918, 2020
162020
Unlinked rRNA genes are widespread among Bacteria and Archaea
TE Brewer, M Albertsen, A Edwards, RH Kirkegaard, EPC Rocha, N Fierer
The ISME Journal 14 (2), 597-608, 2020
142020
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