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Rasmus Hansen Kirkegaard
Rasmus Hansen Kirkegaard
Staff scientist at Aalborg University
Verified email at bio.aau.dk
Title
Cited by
Cited by
Year
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504-509, 2015
22012015
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
PHN Mads Albertsen , Søren M. Karst , Anja S. Ziegler , Rasmus H. Kirkegaard
PLoS ONE 10 (7), e0132783, 2015
5232015
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data
KSS Andersen, RH Kirkegaard, SM Karst, M Albertsen
bioRxiv, 299537, 2018
4562018
Experimental methods in wastewater treatment
M Albertsen, RH Kirkegaard, MS Dueholm, PHÊ Nielsen
Experimental Methods in Wastewater Treatment, 2016
348*2016
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ...
Nature Methods 18 (2), 165-169, 2021
2782021
Oxford Nanopore R10. 4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing
M Sereika, RH Kirkegaard, SM Karst, TY Michaelsen, EA Sørensen, ...
Nature methods 19 (7), 823-826, 2022
2032022
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
CM Singleton, F Petriglieri, JM Kristensen, RH Kirkegaard, TY Michaelsen, ...
Nature Communications 12 (1), 1-13, 2021
198*2021
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ...
Nature biotechnology, 2018
1862018
The impact of immigration on microbial community composition in full-scale anaerobic digesters
RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ...
Scientific Reports 7 (1), 9343, 2017
1722017
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups
SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ...
Database 2017, bax016, 2017
1712017
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge
SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ...
Frontiers in Microbiology 8, 1134, 2017
1662017
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics
L Hao, TY Michaelsen, CM Singleton, G Dottorini, RH Kirkegaard, ...
The ISME Journal 14 (4), 906-918, 2020
1082020
Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria
K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ...
MBio 9 (4), 10.1128/mbio. 01186-18, 2018
1042018
Cultivation and genomic analysis of “Candidatus Nitrosocaldus islandicus”, an obligately thermophilic, ammonia-oxidizing thaumarchaeon from a hot spring biofilm in Graendalur …
A Daebeler, C Herbold, J Vierheilig, CJ Sedlacek, P Pjevac, M Albertsen, ...
Frontiers in Microbiology 9, 193, 2018
912018
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions
Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ...
Scientific Reports 6 (1), 25719, 2016
822016
mmgenome: a toolbox for reproducible genome extraction from metagenomes
SM Karst, RH Kirkegaard, M Albertsen
bioRxiv, 059121, 2016
742016
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge
SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ...
The ISME journal 10 (9), 2223-2234, 2016
692016
Novel prosthecate bacteria from the candidate phylum Acetothermia
L Hao, SJ McIlroy, RH Kirkegaard, SM Karst, WEY Fernando, H Aslan, ...
The ISME journal 12 (9), 2225-2237, 2018
602018
Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure …
C Jiang, M Peces, MH Andersen, S Kucheryavskiy, M Nierychlo, ...
Water Research 193, 116871, 2021
592021
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters
RH Kirkegaard, MS Dueholm, SJ McIlroy, M Nierychlo, SM Karst, ...
The ISME journal 10 (10), 2352-2364, 2016
572016
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