|limma powers differential expression analyses for RNA-sequencing and microarray studies|
ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth
Nucleic acids research 43 (7), e47-e47, 2015
|ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays|
Y Hu, GK Smyth
Journal of immunological methods 347 (1-2), 70-78, 2009
|The molecular signature of tissue resident memory CD8 T cells isolated from the brain|
LM Wakim, A Woodward-Davis, R Liu, Y Hu, J Villadangos, G Smyth, ...
The Journal of Immunology 189 (7), 3462-3471, 2012
|Id2 expression delineates differential checkpoints in the genetic program of CD8α+ and CD103+ dendritic cell lineages|
JT Jackson, Y Hu, R Liu, F Masson, A d'Amico, S Carotta, A Xin, ...
The EMBO journal 30 (13), 2690-2704, 2011
|Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells|
IJ Majewski, ME Ritchie, B Phipson, J Corbin, M Pakusch, A Ebert, ...
Blood, The Journal of the American Society of Hematology 116 (5), 731-739, 2010
|Fas-mediated neutrophil apoptosis is accelerated by Bid, Bak, and Bax and inhibited by Bcl-2 and Mcl-1|
BA Croker, JA O'Donnell, CJ Nowell, D Metcalf, G Dewson, KJ Campbell, ...
Proceedings of the National Academy of Sciences 108 (32), 13135-13140, 2011
|Pax5 loss imposes a reversible differentiation block in B-progenitor acute lymphoblastic leukemia|
GJ Liu, L Cimmino, JG Jude, Y Hu, MT Witkowski, MD McKenzie, ...
Genes & development 28 (12), 1337-1350, 2014
|Haemopedia: an expression atlas of murine hematopoietic cells|
CA De Graaf, J Choi, TM Baldwin, JE Bolden, KA Fairfax, AJ Robinson, ...
Stem cell reports 7 (3), 571-582, 2016
|c-Maf-dependent T reg cell control of intestinal TH 17 cells and IgA establishes host–microbiota homeostasis|
C Neumann, J Blume, U Roy, PP Teh, A Vasanthakumar, A Beller, Y Liao, ...
Nature immunology 20 (4), 471-481, 2019
|Epigenetic regulator Smchd1 functions as a tumor suppressor|
H San Leong, K Chen, Y Hu, S Lee, J Corbin, M Pakusch, JM Murphy, ...
Cancer research 73 (5), 1591-1599, 2013
|The use of miRNA microarrays for the analysis of cancer samples with global miRNA decrease|
D Wu, Y Hu, S Tong, BRG Williams, GK Smyth, MP Gantier
Rna 19 (7), 876-888, 2013
|statmod: Statistical modeling|
G Smyth, Y Hu, P Dunn, B Phipson, Y Chen
R package version 1 (4), 17, 2013
|Erg is required for self-renewal of hematopoietic stem cells during stress hematopoiesis in mice|
AP Ng, SJ Loughran, D Metcalf, CD Hyland, CA de Graaf, Y Hu, GK Smyth, ...
Blood, The Journal of the American Society of Hematology 118 (9), 2454-2461, 2011
|MOZ regulates B-cell progenitors and, consequently, Moz haploinsufficiency dramatically retards MYC-induced lymphoma development|
BN Sheikh, SCW Lee, F El-Saafin, HK Vanyai, Y Hu, SHM Pang, ...
Blood 125 (12), 1910-1921, 2015
|Activated Notch counteracts Ikaros tumor suppression in mouse and human T-cell acute lymphoblastic leukemia|
MT Witkowski, L Cimmino, Y Hu, T Trimarchi, H Tagoh, MD McKenzie, ...
Leukemia 29 (6), 1301-1311, 2015
|Loss of NF-κB1 causes gastric cancer with aberrant inflammation and expression of immune checkpoint regulators in a STAT-1-dependent manner|
LA O’Reilly, TL Putoczki, LA Mielke, JT Low, A Lin, A Preaudet, MJ Herold, ...
Immunity 48 (3), 570-583. e8, 2018
|limma: linear models for microarray and RNA-Seq data user’s guide|
GK Smyth, M Ritchie, N Thorne, J Wettenhall, W Shi, Y Hu
|Lung basal stem cells rapidly repair DNA damage using the error-prone nonhomologous end-joining pathway|
CE Weeden, Y Chen, SB Ma, Y Hu, G Ramm, KD Sutherland, GK Smyth, ...
PLoS biology 15 (1), e2000731, 2017
|Linear ubiquitin chain assembly complex coordinates late thymic T-cell differentiation and regulatory T-cell homeostasis|
CE Teh, N Lalaoui, R Jain, AN Policheni, M Heinlein, S Alvarez-Diaz, ...
Nature communications 7 (1), 1-15, 2016
|Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits|
B Pal, Y Chen, A Bert, Y Hu, JM Sheridan, T Beck, W Shi, K Satterley, ...
Breast Cancer Research 17 (1), 1-16, 2015