| Variation in genomic landscape of clear cell renal cell carcinoma across Europe G Scelo, Y Riazalhosseini, L Greger, L Letourneau, M Gonzàlez-Porta, ... Nature communications 5 (1), 5135, 2014 | 204 | 2014 |
| Umap and Bismap: quantifying genome and methylome mappability M Karimzadeh, C Ernst, A Kundaje, MM Hoffman Nucleic Acids Research 46 (20), e120, 2018 | 149 | 2018 |
| Massively multiplex single-molecule oligonucleosome footprinting NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan, A Keith, LS Estes, ... Elife 9, e59404, 2020 | 71 | 2020 |
| A general framework for interrogation of mRNA stability programs identifies RNA-binding proteins that govern cancer transcriptomes G Perron, P Jandaghi, S Solanki, M Safisamghabadi, C Storoz, ... Cell Reports 23 (6), 1639-1650, 2018 | 64 | 2018 |
| Top considerations for creating bioinformatics software documentation M Karimzadeh, MM Hoffman Briefings in Bioinformatics 19 (4), 693–699, 2017 | 50 | 2017 |
| Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses A Banerjee, N El-Sayes, P Budylowski, RA Jacob, D Richard, H Maan, ... IScience 24 (5), 2021 | 49 | 2021 |
| Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome M Karimzadeh, MM Hoffman Genome biology 23 (126), https://doi.org/10.1186/s13059-022-02690, 2022 | 41 | 2022 |
| Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity CM McEvoy, JM Murphy, L Zhang, S Clotet-Freixas, JA Mathews, J An, ... Nature Communications 13 (1), 7634, 2022 | 37 | 2022 |
| Human papillomavirus integration transforms chromatin to drive oncogenesis M Karimzadeh, C Arlidge, A Rostami, M Lupien, SV Bratman, ... Genome biology 24 (142), 2023 | 26 | 2023 |
| To transformers and beyond: large language models for the genome ME Consens, C Dufault, M Wainberg, D Forster, M Karimzadeh, ... arXiv preprint arXiv:2311.07621, 2023 | 18 | 2023 |
| Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease M Sugiyama, H Cui, SR Dar'ya, M Karimzadeh, E Rujas, H Maan, S Hayat, ... Scientific Reports, 2021 | 12 | 2021 |
| The molecular consequences of androgen activity in the human breast F Raths, M Karimzadeh, N Ing, A Martinez, Y Qu, TY Lee, B Mulligan, ... Cell Genomics 3 (3), 2023 | 11 | 2023 |
| Analysis of clonal evolution in colorectal cancer. DM Graham, M Arseneault, MA Sukhai, L Letourneau, M Karimzadeh, ... Journal of Clinical Oncology 32 (15_suppl), 3510-3510, 2014 | 9 | 2014 |
| Cell–Cell Contact Mediates Gene Expression and Fate Choice of Human Neural Stem/Progenitor Cells WB McIntyre, M Karimzadeh, Y Riazalhosseini, M Khazaei, MG Fehlings Cells 11 (11), 1741, 2022 | 4 | 2022 |
| Aberration hubs in protein interaction networks highlight actionable targets in cancer M Karimzadeh, P Jandaghi, AI Papadakis, S Trainor, J Rung, ... Oncotarget 9 (38), 25166-25180, 2018 | 4 | 2018 |
| Analytics methods and tools for integration of biomedical data in medicine L Zhang, M Karimzadeh, M Welch, C McIntosh, B Wang Artificial Intelligence in Medicine, 113-129, 2021 | 3 | 2021 |
| Semi-automated genome annotation using epigenomic data and Segway EG Roberts, M Mendez, C Viner, M Karimzadeh, R Chan, R Ancar, ... bioRxiv, 080382, 2016 | 2 | 2016 |
| Integrative identification of non-coding regulatory regions driving metastatic prostate cancer BJ Woo, R Moussavi-Baygi, H Karner, M Karimzadeh, H Yousefi, S Lee, ... Cell Reports 43 (9), 2024 | 1 | 2024 |
| Beyond detection: AI-based classification of breast cancer invasiveness using cell-free orphan non-coding RNAs M Karimzadeh, TB Cavazos, NC Chen, NK Tbeileh, D Siegel, ... Cancer Research 84 (6_Supplement), 3678-3678, 2024 | 1 | 2024 |
| Detection of early-stage cancers using circulating orphan non-coding RNAs in blood. M Karimzadeh, J Wang, TB Cavazos, LS Schwartzberg, M Multhaup, J Ku, ... Journal of Clinical Oncology 41 (16_suppl), 3051-3051, 2023 | 1 | 2023 |
Michael M. HoffmanChair and Senior Scientist, University Health Network/Associate Professor, University of TorontoGeverifieerd e-mailadres voor utoronto.ca
