Kristoffer Sahlin
Kristoffer Sahlin
Assistant Professor at Department of Mathematics, Stockholm University
Verified email at - Homepage
Cited by
Cited by
The Norway spruce genome sequence and conifer genome evolution
B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ...
Nature 497 (7451), 579-584, 2013
BESST-efficient scaffolding of large fragmented assemblies
K Sahlin, F Vezzi, B Nystedt, J Lundeberg, L Arvestad
BMC bioinformatics 15, 1-11, 2014
Error correction enables use of oxford nanopore technology for reference-free transcriptome analysis
K Sahlin, P Medvedev
Nature communications 12 (1), 1-13, 2021
De novo clustering of long-read transcriptome data using a greedy, quality value-based algorithm
K Sahlin, P Medvedev
Journal of Computational Biology 27 (4), 472-484, 2020
Effective sequence similarity detection with strobemers
K Sahlin
Genome Research 31 (11), 2080-2094, 2021
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon
K Sahlin, M Tomaszkiewicz, KD Makova, P Medvedev
Nature Communications 9 (1), 4601, 2018
Assembly scaffolding with PE-contaminated mate-pair libraries
K Sahlin, R Chikhi, L Arvestad
Bioinformatics 32 (13), 1925-1932, 2016
Estimating convergence of Markov chain Monte Carlo simulations
K Sahlin
Sweden: Mathematical Statistics, Stockholm University, 2011
NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing data
K Sahlin, M Lim, S Prost
Ecology and Evolution 11 (3), 1392-1398, 2021
Strobealign: flexible seed size enables ultra-fast and accurate read alignment
K Sahlin
Genome Biology 23 (1), 260, 2022
Accurate spliced alignment of long RNA sequencing reads
K Sahlin, V Mäkinen
Bioinformatics 37 (24), 4643–4651, 2021
Gap filling as exact path length problem
L Salmela, K Sahlin, V Mäkinen, AI Tomescu
International Conference on Research in Computational Molecular Biology, 281-292, 2015
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment
A Pomerantz, K Sahlin, N Vasiljevic, A Seah, M Lim, E Humble, ...
Nature Protocols 17 (6), 1415-1443, 2022
Improved gap size estimation for scaffolding algorithms
K Sahlin, N Street, J Lundeberg, L Arvestad
Bioinformatics 28 (17), 2215-2222, 2012
A survey of mapping algorithms in the long-reads era
K Sahlin, T Baudeau, B Cazaux, C Marchet
Genome Biology 24 (1), 133, 2023
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies
S Rangavittal, N Stopa, M Tomaszkiewicz, K Sahlin, KD Makova, ...
BMC genomics 20, 1-11, 2019
Chaining with overlaps revisited
V Mäkinen, K Sahlin
arXiv preprint arXiv:2001.06864, 2020
Safety in multi-assembly via paths appearing in all path covers of a DAG
M Cáceres, B Mumey, E Husić, R Rizzi, M Cairo, K Sahlin, AI Tomescu
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (6 …, 2021
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias
K Sahlin, M Frånberg, L Arvestad
Journal of Computational Biology 24 (6), 581-589, 2017
Efficient mapping of accurate long reads in minimizer space with mapquik
B Ekim, K Sahlin, P Medvedev, B Berger, R Chikhi
Genome research 33 (7), 1188-1197, 2023
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