| The genome of Tetranychus urticae reveals herbivorous pest adaptations M Grbić, T Van Leeuwen, RM Clark, S Rombauts, P Rouzé, V Grbić, ... Nature 479 (7374), 487-492, 2011 | 1202 | 2011 |
| The Ectocarpus genome and the independent evolution of multicellularity in brown algae JM Cock, L Sterck, P Rouzé, D Scornet, AE Allen, G Amoutzias, ... Nature 465 (7298), 617-621, 2010 | 998 | 2010 |
| zt: A sofware tool for simple and partial mantel tests E Bonnet, Y Van de Peer Journal of Statistical software 7, 1-12, 2002 | 831 | 2002 |
| Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences E Bonnet, J Wuyts, P Rouzé, Y Van de Peer Bioinformatics 20 (17), 2911-2917, 2004 | 712 | 2004 |
| Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes E Bonnet, J Wuyts, P Rouzé, Y Van de Peer Proceedings of the National Academy of Sciences 101 (31), 11511-11516, 2004 | 571 | 2004 |
| TAPIR, a web server for the prediction of plant microRNA targets, including target mimics E Bonnet, Y He, K Billiau, Y Van de Peer Bioinformatics 26 (12), 1566-1568, 2010 | 359 | 2010 |
| A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana J Van Leene, H Stals, D Eeckhout, G Persiau, E Van De Slijke, ... Molecular & Cellular Proteomics 6 (7), 1226-1238, 2007 | 270 | 2007 |
| Generic eukaryotic core promoter prediction using structural features of DNA T Abeel, Y Saeys, E Bonnet, P Rouzé, Y Van de Peer Genome research 18 (2), 310-323, 2008 | 250 | 2008 |
| The small RNA world of plants E Bonnet, Y Van de Peer, P Rouzé New Phytologist 171 (3), 451-468, 2006 | 181 | 2006 |
| Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps I Kuperstein, E Bonnet, HA Nguyen, D Cohen, E Viara, L Grieco, ... Oncogenesis 4 (7), e160-e160, 2015 | 148 | 2015 |
| Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer AA Margolin, E Bilal, E Huang, TC Norman, L Ottestad, BH Mecham, ... Science translational medicine 5 (181), 181re1-181re1, 2013 | 131 | 2013 |
| Integrative multi-omics module network inference with Lemon-Tree E Bonnet, L Calzone, T Michoel PLoS computational biology 11 (2), e1003983, 2015 | 117 | 2015 |
| Module network inference from a cancer gene expression data set identifies microRNA regulated modules E Bonnet, M Tatari, A Joshi, T Michoel, K Marchal, G Berx, Y Van de Peer PloS one 5 (4), e10162, 2010 | 69 | 2010 |
| BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats E Bonnet, L Calzone, D Rovera, G Stoll, E Barillot, A Zinovyev BMC Systems Biology 7 (1), 18, 2013 | 62 | 2013 |
| Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples E Bonnet, ML Moutet, C Baulard, D Bacq-Daian, F Sandron, L Mesrob, ... PloS one 13 (4), e0195471, 2018 | 61 | 2018 |
| ROMA: representation and quantification of module activity from target expression data L Martignetti, L Calzone, E Bonnet, E Barillot, A Zinovyev Frontiers in genetics 7, 18, 2016 | 53 | 2016 |
| Validating module network learning algorithms using simulated data T Michoel, S Maere, E Bonnet, A Joshi, Y Saeys, T Van den Bulcke, ... BMC bioinformatics 8, 1-15, 2007 | 52 | 2007 |
| Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data E Bonnet, T Michoel, Y Van de Peer Bioinformatics 26 (18), i638-i644, 2010 | 44 | 2010 |
| Whole-genome bisulfite sequencing for the analysis of genome-wide DNA methylation and hydroxymethylation patterns at single-nucleotide resolution M Kernaleguen, C Daviaud, Y Shen, E Bonnet, V Renault, JF Deleuze, ... Epigenome Editing: Methods and Protocols, 311-349, 2018 | 40 | 2018 |
| Reactive astrocytes promote proteostasis in Huntington’s disease through the JAK2-STAT3 pathway L Abjean, L Ben Haim, M Riquelme-Perez, P Gipchtein, C Derbois, ... Brain 146 (1), 149-166, 2023 | 39 | 2023 |
Yves Van de PeerProfessor in Bioinformatics and Genome Biology, Ghent University, BelgiumVerified email at psb.ugent.be
