A benchmark of batch-effect correction methods for single-cell RNA sequencing data HTN Tran, KS Ang, M Chevrier, X Zhang, NYS Lee, M Goh, J Chen Genome biology 21, 1-32, 2020 | 832 | 2020 |
Recon 2.2: from reconstruction to model of human metabolism N Swainston, K Smallbone, H Hefzi, PD Dobson, J Brewer, M Hanscho, ... Metabolomics 12, 1-7, 2016 | 325 | 2016 |
A consensus genome-scale reconstruction of Chinese hamster ovary cell metabolism H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ... Cell systems 3 (5), 434-443. e8, 2016 | 249 | 2016 |
Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST Y Long, KS Ang, M Li, KLK Chong, R Sethi, C Zhong, H Xu, Z Ong, ... Nature Communications 14 (1), 1155, 2023 | 152 | 2023 |
Unsupervised spatially embedded deep representation of spatial transcriptomics H Xu, H Fu, Y Long, KS Ang, R Sethi, K Chong, M Li, R Uddamvathanak, ... Genome Medicine 16 (1), 12, 2024 | 125 | 2024 |
Kinetic modeling of mammalian cell culture bioprocessing: the quest to advance biomanufacturing S Kyriakopoulos, KS Ang, M Lakshmanan, Z Huang, S Yoon, R Gunawan, ... Biotechnology Journal 13 (3), 1700229, 2018 | 87 | 2018 |
DISCO: a database of Deeply Integrated human Single-Cell Omics data M Li, X Zhang, KS Ang, J Ling, R Sethi, NYS Lee, F Ginhoux, J Chen Nucleic acids research 50 (D1), D596-D602, 2022 | 85 | 2022 |
Metabolic modeling of microbial community interactions for health, environmental and biotechnological applications KS Ang, M Lakshmanan, NR Lee, DY Lee Current Genomics 19 (8), 712-722, 2018 | 38 | 2018 |
Codon optimization of Saccharomyces cerevisiae mating factor alpha prepro-leader to improve recombinant protein production in Pichia pastoris J Ahn, MJ Jang, KS Ang, H Lee, ES Choi, DY Lee Biotechnology letters 38, 2137-2143, 2016 | 26 | 2016 |
Multi-omics data driven analysis establishes reference codon biases for synthetic gene design in microbial and mammalian cells KS Ang, S Kyriakopoulos, W Li, DY Lee Methods 102, 26-35, 2016 | 23 | 2016 |
Comparative phenotypic analysis of CHO clones and culture media for lactate shift JK Hong, S Nargund, M Lakshmanan, S Kyriakopoulos, DY Kim, KS Ang, ... Journal of biotechnology 283, 97-104, 2018 | 21 | 2018 |
Exploring codon context bias for synthetic gene design of a thermostable invertase in Escherichia coli HB Pek, M Klement, KS Ang, BKS Chung, DSW Ow, DY Lee Enzyme and microbial technology 75, 57-63, 2015 | 21 | 2015 |
Multi‐omics profiling of a CHO cell culture system unravels the effect of culture pH on cell growth, antibody titer, and product quality AP Lee, YJ Kok, M Lakshmanan, D Leong, L Zheng, HL Lim, S Chen, ... Biotechnology and Bioengineering 118 (11), 4305-4316, 2021 | 19 | 2021 |
Synthetic gene design using codon optimization on-line (COOL) K Yu, KS Ang, DY Lee Synthetic DNA: Methods and Protocols, 13-34, 2017 | 12 | 2017 |
On the impact of biomass composition in constraint-based flux analysis M Lakshmanan, S Long, KS Ang, N Lewis, DY Lee bioRxiv, 652040, 2019 | 10 | 2019 |
Deciphering spatial domains from spatial multi-omics with SpatialGlue Y Long, KS Ang, R Sethi, S Liao, Y Heng, L van Olst, S Ye, C Zhong, H Xu, ... Nature Methods, 1-10, 2024 | 7 | 2024 |
A Consensus genomescale reconstruction of Chinese hamster ovary cell metabolism. Cell Syst 3 (5): 434-443. e8 H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ... | 7 | 2016 |
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. Cell Syst. 3, 434–443 e8 H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ... | 6 | 2016 |
A genetic algorithm-based approach for pre-processing metabolomics and lipidomics LC–MS data HC Yeo, BKS Chung, W Chong, JX Chin, KS Ang, M Lakshmanan, YS Ho, ... Metabolomics 12, 1-13, 2016 | 6 | 2016 |
Establishing a human bone marrow single cell reference atlas to study ageing and diseases NYS Lee, M Li, KS Ang, J Chen Frontiers in Immunology 14, 1127879, 2023 | 5 | 2023 |