| Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011 | 725 | 2011 |
| A spatial and temporal map of C. elegans gene expression WC Spencer, G Zeller, JD Watson, SR Henz, KL Watkins, RD McWhirter, ... Genome research 21 (2), 325-341, 2011 | 318 | 2011 |
| RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints Y Zhong, T Karaletsos, P Drewe, VT Sreedharan, D Kuo, K Singh, ... Bioinformatics 33 (1), 139-141, 2017 | 147 | 2017 |
| Prediction of potent shRNAs with a sequential classification algorithm R Pelossof, L Fairchild, CH Huang, C Widmer, VT Sreedharan, N Sinha, ... Nature biotechnology 35 (4), 350-353, 2017 | 132 | 2017 |
| RNA‐Seq read alignments with PALMapper G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010 | 85 | 2010 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer Cell 39 (3), 288-293, 2021 | 72 | 2021 |
| MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch Bioinformatics 29 (20), 2529-2538, 2013 | 71 | 2013 |
| Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA I Kulemzina, MR Schumacher, V Verma, J Reiter, J Metzler, AV Failla, ... Public Library of Science 8 (8), e1002856, 2012 | 54 | 2012 |
| Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ... Bioinformatics 30 (9), 1300-1301, 2014 | 18 | 2014 |
| AspAlt: A tool for inter-database, inter-genomic and user-specific comparative analysis of alternative transcription and alternative splicing in 46 eukaryotes A Bhasi, P Philip, VT Sreedharan, P Senapathy Genomics 94 (1), 48-54, 2009 | 16 | 2009 |
| Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ... BMC Bioinformatics 12, 1-2, 2011 | 6 | 2011 |
| Framework for Multi-task Multiple Kernel Learning and Applications in Genome Analysis C Widmer, M Kloft, VT Sreedharan, G Rätsch arXiv preprint arXiv:1506.09153, 2015 | 3 | 2015 |
| CIViCutils: Matching and downstream processing of clinical annotations from CIViC ML Rosano-Gonzalez, VT Sreedharan, A Hanns, DJ Stekhoven, F Singer F1000Research 12, 1304, 2023 | | 2023 |
| Oqtans: a multifunctional workbench for RNA-seq data analysis VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ... BMC Bioinformatics 15 (3), 1-2, 2014 | | 2014 |
| The Role of Cohesin Associated Factors, Pds5, Scc3, and Wpl1 during Cohesion Establishment and Maintenance in Budding Yeast I Kulemzina | | 2012 |
| Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines X Gan, J Behr, J Steffen, K Hildebrand, L Allchin, L Goodstadt, O Stegle, ... | | 2011 |
| Extensive Genomic and Transcriptomic Variation in the 19 Founders of the Arabidopsis MAGIC Lines J Steffen, J Behr, P Drewe, K Hillebrand, P Kover, R Lyngsoe, R Mott, ... 22nd International Conference on Arabidopsis Research (ICAR 2011), 190, 2011 | | 2011 |
| characteristic hinge angles. J. Cell Biol. 156, 419–424. 11. Skibbens, RV (2011). Sticking a fork in cohesin–it’s not done yet! Trends Genet. 27, 499–506. J Reiter, J Metzler, AV Failla, C Lanz, VT Sreedharan, G Rätsch, D Ivanov Trans. R. Soc. Lond. B Biol. Sci 360, 537-542, 2007 | | 2007 |
| Reproducible Quantitative Transcriptome Analysis with VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, P Drewe, R Bohnert, ... | | |
| Supplementary Methods Multiple Genomes and Transcriptomes of Arabidopsis thaliana X Gan, O Stegle, J Behr, J Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... | | |
Gunnar RätschProfessor, ETH ZürichGeverifieerd e-mailadres voor inf.ethz.ch
