Kristofer Davie
Kristofer Davie
KU Leuven
Verified email at kuleuven.vib.be
TitleCited byYear
Discovery of transcription factors and regulatory regions driving in vivo tumor development by ATAC-seq and FAIRE-seq open chromatin profiling
K Davie, J Jacobs, M Atkins, D Potier, V Christiaens, G Halder, S Aerts
PLoS genetics 11 (2), e1004994, 2015
892015
A single-cell transcriptome atlas of the aging Drosophila brain
K Davie, J Janssens, D Koldere, M De Waegeneer, U Pech, Ł Kreft, ...
Cell 174 (4), 982-998. e20, 2018
752018
Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference
D Potier, K Davie, G Hulselmans, MN Sanchez, L Haagen, D Koldere, ...
Cell reports 9 (6), 2290-2303, 2014
392014
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ...
Genome research 26 (7), 882-895, 2016
342016
The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes
J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ...
Nature genetics 50 (7), 1011, 2018
262018
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ...
Nature methods 16 (5), 397, 2019
72019
A single-cell catalogue of regulatory states in the ageing Drosophila brain
K Davie, J Janssens, D Koldere, U Pech, S Aibar, M De Waegeneer, ...
bioRxiv, 237420, 2017
22017
Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution
I Almudi, CA Martín-Blanco, IM García-Fernandez, A López-Catalina, ...
EvoDevo 10 (1), 6, 2019
2019
Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
bioRxiv, 715995, 2019
2019
Cis-topic modelling of single cell epigenomes
CGB Bravo, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ...
bioRxiv, 2018
2018
Cis-topic modelling of single cell epigenomes
C Bravo González-Blas, L Minnoye, D Papasokrati, S Aibar, ...
2018
Decoding SOX10 gene regulatory programs using time-series, single-cell, and cross-species chromatin profiling
L Minnoye, C Bravo González-Blas, D Papasokrati, S Aibar, ...
EMBL Conference: From Functional Genomics to Systems Biology, Date: 2018/11 …, 2018
2018
Cis-topic modelling of single cell epigenomes
CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ...
bioRxiv, 370346, 2018
2018
Natural Variation of Chromatin Accessibility reveals a new epithelial Enhancer model
J Jacobs, K Davie, M Atkins, L Romanelli, G Hulselmans, G Halder, ...
European Drosophila Research Conference, Date: 2017/10/22-2017/10/25 …, 2017
2017
Decoding epithelial enhancer logic using natural variation and single-cell ATAC-seq
J Jacobs, V Christiaens, K Davie, S Aerts
CSHL Meeting Systems Biology: Global Regulation of Gene Expression, Date …, 2017
2017
Studying cellular differentiation in Drosophila using single cell ATAC-seq
K Davie, J Jacobs, V Christiaens, S Aerts
Single Cell Genomics, Date: 2016/09/14-2016/09/16, Location: Wellcome Genome …, 2016
2016
A novel High-throughput Enhancer reporter assay reveals unsophisticated p53 enhancer logic
A Verfaillie, K Davie, D Svetlichnyy, M Fiers, S Aerts
Functional Genomics and Systems Biology, Date: 2015/10/28-2015/10/30 …, 2015
2015
Single cell profiling of an in vivo, RasV12 based tumour in the Drosophila eye primordium
K Davie, J Jacobs, V Christiaens, S Aerts
Single Cell Genomics, Date: 2015/09/16-2015/09/18, Location: Hubrecht …, 2015
2015
REVERSE ENGINEERING THE EYE DEVELOPMENTAL GENE REGULATORY NETWORK BY LARGE-SCALE TRANSCRIPTOME PERTURBATIONS
D Potier, K Davie, M Naval Sanchez, L Haagen, VH Huynh-Thu, P Geurts, ...
EDRC, Date: 2013/10/16-2013/10/19, Location: Barcelona, 2013
2013
Preprint highlights, selected by the biological community
CS Hopp, S Kanatani, NK Archer, RJ Miller, H Liu, K Chiou, LS Miller, ...
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Articles 1–20