Kristofer Davie
Kristofer Davie
KU Leuven
Verified email at kuleuven.vib.be
Title
Cited by
Cited by
Year
A single-cell transcriptome atlas of the aging Drosophila brain
K Davie, J Janssens, D Koldere, M De Waegeneer, U Pech, Ł Kreft, ...
Cell 174 (4), 982-998. e20, 2018
1822018
Discovery of transcription factors and regulatory regions driving in vivo tumor development by ATAC-seq and FAIRE-seq open chromatin profiling
K Davie, J Jacobs, M Atkins, D Potier, V Christiaens, G Halder, S Aerts
PLoS Genet 11 (2), e1004994, 2015
1172015
The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes
J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ...
Nature genetics 50 (7), 1011-1020, 2018
552018
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ...
Nature methods 16 (5), 397-400, 2019
522019
Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference
D Potier, K Davie, G Hulselmans, MN Sanchez, L Haagen, D Koldere, ...
Cell reports 9 (6), 2290-2303, 2014
492014
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ...
Genome research 26 (7), 882-895, 2016
442016
Xenotransplanted human cortical neurons reveal species-specific development and functional integration into mouse visual circuits
D Linaro, B Vermaercke, R Iwata, A Ramaswamy, B Libé-Philippot, ...
Neuron 104 (5), 972-986. e6, 2019
152019
A scalable SCENIC workflow for single-cell gene regulatory network analysis
B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ...
Nature Protocols 15 (7), 2247-2276, 2020
52020
Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution
I Almudi, CA Martín-Blanco, IM García-Fernandez, A López-Catalina, ...
EvoDevo 10 (1), 6, 2019
52019
Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
bioRxiv, 715995, 2019
52019
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings
I Almudi, J Vizueta, CDR Wyatt, A de Mendoza, F Marlétaz, PN Firbas, ...
Nature communications 11 (1), 1-11, 2020
32020
Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics
C Bravo González‐Blas, XJ Quan, R Duran‐Romaña, II Taskiran, ...
Molecular systems biology 16 (5), e9438, 2020
32020
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
Nature Cell Biology 22 (8), 986-998, 2020
22020
A single-cell catalogue of regulatory states in the ageing Drosophila brain
K Davie, J Janssens, D Koldere, U Pech, S Aibar, M De Waegeneer, ...
bioRxiv, 237420, 2017
22017
Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects
I Almudi, J Vizueta, A De Mendoza, C Wyatt, F Marletaz, P Firbas, ...
BioRxiv, 2019
12019
Cis-topic modelling of single-cell epigenomes
CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ...
bioRxiv, 370346, 2018
12018
Actuation Enhances Patterning in Human Neural Tube Organoids
ARA Fattah, B Daza, G Rustandi, MA Berrocal-Rubio, B Gorissen, ...
bioRxiv, 2020
2020
Reproducible single-cell transcriptomics analysis with SCENIC using containers and scalable workflows
C Flerin, B Van de Sande, S Aibar, K Davie, S Aerts
Single Cell Omics Germany: Computational Single Cell Genomics Workshop, Date …, 2019
2019
A single-cell catalogue of regulatory states in the ageing Drosophila brain
J Janssens, K Davie, D Koldere, U Pech, S Aibar, M De Waegeneer, ...
Applied Bio-Informatics, Location: Leuven, 2018
2018
A single-cell catalogue of regulatory states in the ageing brain
K Davie, D Koldere, S Aibar, C Bravo Gonzalez-Blas, S Aerts, J Janssens
8th Dutch Belgian Drosophila Meeting, Location: Utrecht, 2018
2018
The system can't perform the operation now. Try again later.
Articles 1–20