| The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum R Agren, L Liu, S Shoaie, W Vongsangnak, I Nookaew, J Nielsen PLoS computational biology 9 (3), e1002980, 2013 | 452 | 2013 |
| Biomedical text mining and its applications in cancer research F Zhu, P Patumcharoenpol, C Zhang, Y Yang, J Chan, A Meechai, ... Journal of biomedical informatics 46 (2), 200-211, 2013 | 310 | 2013 |
| De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial … JF Nijkamp, M van den Broek, E Datema, S de Kok, L Bosman, MA Luttik, ... Microbial cell factories 11, 1-17, 2012 | 286 | 2012 |
| Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis KK Hong, W Vongsangnak, GN Vemuri, J Nielsen Proceedings of the National Academy of Sciences 108 (29), 12179-12184, 2011 | 161 | 2011 |
| Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis Y Li, Z Zhang, F Liu, W Vongsangnak, Q Jing, B Shen Nucleic acids research 40 (10), 4298-4305, 2012 | 160 | 2012 |
| Towards efficient extraction of notoginseng saponins from cultured cells of Panax notoginseng W Vongsangnak, J Gua, S Chauvatcharin, JJ Zhong Biochemical Engineering Journal 18 (2), 115-120, 2004 | 148 | 2004 |
| A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species MR Andersen, W Vongsangnak, G Panagiotou, MP Salazar, L Lehmann, ... Proceedings of the National Academy of Sciences 105 (11), 4387-4392, 2008 | 147 | 2008 |
| BioMet Toolbox: genome-wide analysis of metabolism M Cvijovic, R Olivares-Hernï¿ ½ndez, R Agren, N Dahr, W Vongsangnak, ... Nucleic acids research 38 (suppl_2), W144-W149, 2010 | 126 | 2010 |
| Evaluation and comparison of multiple aligners for next-generation sequencing data analysis J Shang, F Zhu, W Vongsangnak, Y Tang, W Zhang, B Shen BioMed research international 2014, 2014 | 109 | 2014 |
| Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae W Vongsangnak, P Olsen, K Hansen, S Krogsgaard, J Nielsen BMC genomics 9, 1-14, 2008 | 95 | 2008 |
| Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications JM Otero, W Vongsangnak, MA Asadollahi, R Olivares-Hernandes, ... BMC genomics 11, 1-17, 2010 | 92 | 2010 |
| Heterologous production of polyunsaturated fatty acids in Saccharomyces cerevisiae causes a global transcriptional response resulting in reduced proteasomal … R Ruenwai, A Neiss, K Laoteng, W Vongsangnak, AB Dalfard, ... Biotechnology Journal 6 (3), 343-356, 2011 | 57 | 2011 |
| Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis M Salazar, W Vongsangnak, G Panagiotou, MR Andersen, J Nielsen Molecular Genetics and Genomics 282, 571-586, 2009 | 54 | 2009 |
| Optimizing cultivation of Cordyceps militaris for fast growth and cordycepin overproduction using rational design of synthetic media N Raethong, H Wang, J Nielsen, W Vongsangnak Computational and structural biotechnology journal 18, 1-8, 2020 | 53 | 2020 |
| Genome-scale metabolic network of Cordyceps militaris useful for comparative analysis of entomopathogenic fungi W Vongsangnak, N Raethong, W Mujchariyakul, NN Nguyen, HW Leong, ... Gene 626, 132-139, 2017 | 48 | 2017 |
| Uncovering global metabolic response to cordycepin production in Cordyceps militaris through transcriptome and genome-scale network-driven analysis N Raethong, K Laoteng, W Vongsangnak Scientific reports 8 (1), 9250, 2018 | 45 | 2018 |
| Protective effect of Lactobacillus reuteri KUB-AC5 against Salmonella Enteritidis challenge in chickens M Nakphaichit, S Sobanbua, S Siemuang, W Vongsangnak, J Nakayama, ... Beneficial microbes 10 (1), 43-54, 2019 | 44 | 2019 |
| Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using"-omics" techniques MP Piddocke, A Fazio, W Vongsangnak, ML Wong, HP Heldt-Hansen, ... Microbial cell factories 10, 1-14, 2011 | 43 | 2011 |
| Genome-wide analysis of maltose utilization and regulation in aspergilli W Vongsangnak, M Salazar, K Hansen, J Nielsen Microbiology 155 (12), 3893-3902, 2009 | 40 | 2009 |
| Genome-scale analysis of the metabolic networks of oleaginous Zygomycete fungi W Vongsangnak, R Ruenwai, X Tang, X Hu, H Zhang, B Shen, Y Song, ... Gene 521 (1), 180-190, 2013 | 39 | 2013 |
